4.8 Article

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Assessment of ligand-binding residue predictions in CASP9

Tobias Schmidt et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemical Research Methods

How significant is a protein structure similarity with TM-score=0.5?

Jinrui Xu et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

I-TASSER: a unified platform for automated protein structure and function prediction

Ambrish Roy et al.

NATURE PROTOCOLS (2010)

Article Biochemistry & Molecular Biology

Protein structure prediction: when is it useful?

Yang Zhang

CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

The GOA database in 2009-an integrated Gene Ontology Annotation resource

Daniel Barrell et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Protein-binding site prediction based on three-dimensional protein modeling

Mina Oh et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Improved prediction of protein side-chain conformations with SCWRL4

Georgii G. Krivov et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Review Biochemical Research Methods

Semantic Similarity in Biomedical Ontologies

Catia Pesquita et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

John A. Capra et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation

Chenggang Yu et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

Sitao Wu et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

Michal Brylinski et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Predicting functionally important residues from sequence conservation

John A. Capra et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

A new method to measure the semantic similarity of GO terms

James Z. Wang et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Biomolecules in the computer -: Jmol to the rescue

Angel Herraez

BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION (2006)

Article Biochemical Research Methods

A new measure for functional similarity of gene products based on Gene Ontology

Andreas Schlicker et al.

BMC BIOINFORMATICS (2006)

Review Biochemistry & Molecular Biology

Predicting protein function from sequence and structural data

JD Watson et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)

Article Biochemical Research Methods

Protein homology detection by HMM-HMM comparison

J Söding

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

TM-align: a protein structure alignment algorithm based on the TM-score

Y Zhang et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

E-MSD: an integrated data resource for bioinformatics

S Velankar et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Scoring function for automated assessment of protein structure template quality

Y Zhang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

CT Porter et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)