Related references
Note: Only part of the references are listed.Modeling and automation of sequencing-based characterization of RNA structure
Sharon Aviran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
Julius B. Lucks et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA
Wipapat Kladwang et al.
RNA (2011)
Riboswitches: Structures and Mechanisms
Andrew D. Garst et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)
tRNA Stabilization by Modified Nucleotides
Yuri Motorin et al.
BIOCHEMISTRY (2010)
RNAstructure: software for RNA secondary structure prediction and analysis
Jessica S. Reuter et al.
BMC BIOINFORMATICS (2010)
Advances in RNA structure analysis by chemical probing
Kevin M. Weeks
CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)
Genome-wide measurement of RNA secondary structure in yeast
Michael Kertesz et al.
NATURE (2010)
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
Jason G. Underwood et al.
NATURE METHODS (2010)
Evaluation of the information content of RNA structure mapping data for secondary structure prediction
Scott Quarrier et al.
RNA (2010)
Architecture and secondary structure of an entire HIV-1 RNA genome
Joseph M. Watts et al.
NATURE (2009)
One RNA aptamer sequence, two structures: a collaborating pair that inhibits AMPA receptors
Zhen Huang et al.
NUCLEIC ACIDS RESEARCH (2009)
MODOMICS: a database of RNA modification pathways. 2008 update
Anna Czerwoniec et al.
NUCLEIC ACIDS RESEARCH (2009)
Accurate SHAPE-directed RNA structure determination
Katherine E. Deigan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Improved RNA secondary structure prediction by maximizing expected pair accuracy
Zhi John Lu et al.
RNA (2009)
Generation of synthetic RNA-based thermosensors
Torsten Waldminghaus et al.
BIOLOGICAL CHEMISTRY (2008)
High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis
Somdeb Mitra et al.
NUCLEIC ACIDS RESEARCH (2008)
ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
Suzy M. Vasa et al.
RNA (2008)
The eukaryotic genome as an RNA machine
Paulo P. Amaral et al.
SCIENCE (2008)
CONTRAfold: RNA secondary structure prediction without physics-based models
Chuong B. Do et al.
BIOINFORMATICS (2006)
Post-transcriptional nucleotide modification and alternative folding of RNA
M Helm
NUCLEIC ACIDS RESEARCH (2006)
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
EJ Merino et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator
TA Geissmann et al.
EMBO JOURNAL (2004)
A comprehensive comparison of comparative RNA structure prediction approaches
PP Gardner et al.
BMC BIOINFORMATICS (2004)
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
DH Mathews et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A statistical sampling algorithm for RNA secondary structure prediction
Y Ding et al.
NUCLEIC ACIDS RESEARCH (2003)
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
NUCLEIC ACIDS RESEARCH (2003)
Correlating structural dynamics and function in single ribozyme molecules
XW Zhuang et al.
SCIENCE (2002)
One sequence, two ribozymes: Implications for the emergence of new ribozyme folds
EA Schultes et al.
SCIENCE (2000)
Share Paper
