Journal
NUCLEIC ACIDS RESEARCH
Volume 40, Issue D1, Pages D912-D917Publisher
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkr1012
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Funding
- National Human Genome Research Institute [5P41HG002371-10, 3P41HG002371-10S1, 5U41HG004568-04, 3U41HG004568-03S1]
- Howard Hughes Medical Institute
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The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional elements to critical mass, with a diverse set of 27 biochemical assays now covering 200 distinct human cell types. Within the mouse genome, which has been under study by ENCODE groups for the past 2 years, 37 cell types have been assayed. Over 2000 individual experiments have been completed and submitted to the Data Coordination Center for public use. UCSC makes this data available on the quality-reviewed public Genome Browser (http://genome.ucsc.edu) and on an early-access Preview Browser (http://genome-preview.ucsc.edu). Visual browsing, data mining and download of raw and processed data files are all supported. An ENCODE portal (http://encodeproject.org) provides specialized tools and information about the ENCODE data sets.
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