Related references
Note: Only part of the references are listed.Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
Mark B. Gerstein et al.
SCIENCE (2010)
The Histone H3K36 Methyltransferase MES-4 Acts Epigenetically to Transmit the Memory of Germline Gene Expression to Progeny
Andreas Rechtsteiner et al.
PLOS GENETICS (2010)
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
Chongzhi Zang et al.
BIOINFORMATICS (2009)
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
John W. Nicol et al.
BIOINFORMATICS (2009)
Patterns of exon-intron architecture variation of genes in eukaryotic genomes
Liucun Zhu et al.
BMC GENOMICS (2009)
Massively parallel resequencing of the isogenic Drosophila melanogaster strain w1118; iso-2; iso-3 identifies hotspots for mutations in sensory perception genes
Adrian E. Platts et al.
FLY (2009)
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
Joel Rozowsky et al.
NATURE BIOTECHNOLOGY (2009)
Differential chromatin marking of introns and expressed exons by H3K36me3
Paulina Kolasinska-Zwierz et al.
NATURE GENETICS (2009)
Computation for ChIP-seq and RNA-seq studies
Shirley Pepke et al.
NATURE METHODS (2009)
ChIP-seq: advantages and challenges of a maturing technology
Peter J. Park
NATURE REVIEWS GENETICS (2009)
Chromatin organization marks exon-intron structure
Schraga Schwartz et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Extracting transcription factor targets from ChIP-Seq data
Geetu Tuteja et al.
NUCLEIC ACIDS RESEARCH (2009)
Transcriptome analysis by strand-specific sequencing of complementary DNA
Dmitri Parkhomchuk et al.
NUCLEIC ACIDS RESEARCH (2009)
Impact of Chromatin Structures on DNA Processing for Genomic Analyses
Leonid Teytelman et al.
PLOS ONE (2009)
Mapping accessible chromatin regions using Sono-Seq
Raymond K. Auerbach et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Evaluation of next generation sequencing platforms for population targeted sequencing studies
Olivier Harismendy et al.
GENOME BIOLOGY (2009)
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
David A. Nix et al.
BMC BIOINFORMATICS (2008)
Mapping short DNA sequencing reads and calling variants using mapping quality scores
Heng Li et al.
GENOME RESEARCH (2008)
An integrated software system for analyzing ChIP-chip and ChIP-seq data
Hongkai Ji et al.
NATURE BIOTECHNOLOGY (2008)
Design and analysis of ChIP-seq experiments for DNA-binding proteins
Peter V. Kharchenko et al.
NATURE BIOTECHNOLOGY (2008)
Caenorhabditis elegans mutant allele identification by whole-genome sequencing
Sumeet Sarin et al.
NATURE METHODS (2008)
A large genome center's improvements to the Illumina sequencing system
Michael A. Quail et al.
NATURE METHODS (2008)
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
Anton Valouev et al.
NATURE METHODS (2008)
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
Juliane C. Dohm et al.
NUCLEIC ACIDS RESEARCH (2008)
The transcriptional landscape of the yeast genome defined by RNA sequencing
Ugrappa Nagalakshmi et al.
SCIENCE (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
NATURE (2007)
High-resolution profiling of histone methylations in the human genome
Artern Barski et al.
CELL (2007)
X chromosome repression by localization of the C-elegans dosage compensation machinery to sites of transcription initiation
Sevinc Ercan et al.
NATURE GENETICS (2007)