Related references
Note: Only part of the references are listed.Cytoscape 2.8: new features for data integration and network visualization
Michael E. Smoot et al.
BIOINFORMATICS (2011)
Mining the Plasma Proteome for Disease Applications Across Seven Logs of Protein Abundance
Q. Zhang et al.
JOURNAL OF PROTEOME RESEARCH (2011)
SPIRE: Systematic protein investigative research environment
Eugene Kolker et al.
JOURNAL OF PROTEOMICS (2011)
IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics
Roger Higdon et al.
JOURNAL OF PROTEOMICS (2011)
The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources
Marion Gremse et al.
NUCLEIC ACIDS RESEARCH (2011)
NCBI GEO: archive for functional genomics data sets-10 years on
Tanya Barrett et al.
NUCLEIC ACIDS RESEARCH (2011)
Database resources of the National Center for Biotechnology Information
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2011)
Ongoing and future developments at the Universal Protein Resource
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2011)
Reactome: a database of reactions, pathways and biological processes
David Croft et al.
NUCLEIC ACIDS RESEARCH (2011)
ProteomeCommons.org Collaborative Annotation and Project Management Resource Integrated With the Tranche Repository
James A. Hill et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Saccharomyces Genome Database provides mutant phenotype data
Stacia R. Engel et al.
NUCLEIC ACIDS RESEARCH (2010)
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
J. Muller et al.
NUCLEIC ACIDS RESEARCH (2010)
KEGG for representation and analysis of molecular networks involving diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2010)
PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium
Huaiyu Mi et al.
NUCLEIC ACIDS RESEARCH (2010)
WormBase: a comprehensive resource for nematode research
Todd W. Harris et al.
NUCLEIC ACIDS RESEARCH (2010)
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2010)
Meta-analysis for Protein Identification: A Case Study on Yeast Data
Roger Higdon et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2010)
Estimating false discovery rates for peptide and protein identification using randomized databases
Gregory Hather et al.
PROTEOMICS (2010)
GeneCards Version 3: the human gene integrator
Marilyn Safran et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2010)
Annotating the human genome with Disease Ontology
John D. Osborne et al.
BMC GENOMICS (2009)
MAPU 2.0: high-accuracy proteomes mapped to genomes
Florian Gnad et al.
NUCLEIC ACIDS RESEARCH (2009)
NCBI Reference Sequences: current status, policy and new initiatives
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2009)
A guide to the Proteomics Identifications Database proteomics data repository
Juan Antonio Vizcaino et al.
PROTEOMICS (2009)
Identification of CHI3L1 and MASP2 as a biomarker pair for liver cancer through integrative secretome and transcriptome analysis
Jun Wang et al.
PROTEOMICS CLINICAL APPLICATIONS (2009)
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
Eric W. Deutsch et al.
EMBO REPORTS (2008)
Quantitative mass spectrometry in proteomics: a critical review
Marcus Bantscheff et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2007)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
Protein identification and expression analysis using mass spectrometry
Eugene Kolker et al.
TRENDS IN MICROBIOLOGY (2006)
Randomized sequence databases for tandem mass spectrometry peptide and protein identification
R Higdon et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2005)
An ontology for cell types
J Bard et al.
GENOME BIOLOGY (2005)
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek et al.
NUCLEIC ACIDS RESEARCH (2005)
Open mass spectrometry search algorithm
LY Geer et al.
JOURNAL OF PROTEOME RESEARCH (2004)
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
HB Liu et al.
ANALYTICAL CHEMISTRY (2004)
Open source system for analyzing, validating, and storing protein identification data
R Craig et al.
JOURNAL OF PROTEOME RESEARCH (2004)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
Mass spectrometry-based proteomics
R Aebersold et al.
NATURE (2003)
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
D Fenyö et al.
ANALYTICAL CHEMISTRY (2003)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)
Advances in proteome analysis by mass spectrometry
TJ Griffin et al.
CURRENT OPINION IN BIOTECHNOLOGY (2001)