4.8 Article

mirConnX: condition-specific mRNA-microRNA network integrator

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Entrez Gene: gene-centered information at NCBI

Donna Maglott et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Gastroenterology & Hepatology

MicroRNA-21 is upregulated during the proliferative phase of liver regeneration, targets Pellino-1, and inhibits NF-κB signaling

Rebecca T. Marquez et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2010)

Article Critical Care Medicine

Inhibition and Role of let-7d in Idiopathic Pulmonary Fibrosis

Kusum V. Pandit et al.

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2010)

Article Biochemical Research Methods

Cytoscape Web: an interactive web-based network browser

Christian T. Lopes et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

DBTSS provides a tissue specific dynamic view of Transcription Start Sites

Riu Yamashita et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

Elodie Portales-Casamar et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

Gabriele Sales et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

High-resolution human core-promoter prediction with CoreBoost_HM

Xiaowo Wang et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

Most mammalian mRNAs are conserved targets of microRNAs

Robin C. Friedman et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

The database of experimentally supported targets: a functional update of TarBase

Giorgos L. Papadopoulos et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression

Seungyoon Nam et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

miRecords: an integrated resource for microRNA-target interactions

Feifei Xiao et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

miR2Disease: a manually curated database for microRNA deregulation in human disease

Qinghua Jiang et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Mathematical & Computational Biology

miRo: a miRNA knowledge base

A. Lagana et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2009)

Article Biochemical Research Methods

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder et al.

BMC BIOINFORMATICS (2008)

Article Oncology

MicroRNA-21 targets a network of key tumor-suppressive pathways in glioblastoma cells

Thales Papagiannakopoulos et al.

CANCER RESEARCH (2008)

Article Biochemistry & Molecular Biology

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

Alexander Marson et al.

Article Biochemistry & Molecular Biology

MicroRNA 21 promotes glioma invasion by targeting matrix metalloproteinase regulators

Galina Gabriely et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

miRBase: tools for microRNA genomics

Sam Griffiths-Jones et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Cell Biology

Malignant astrocytic glioma: genetics, biology, and paths to treatment

Frank B. Furnari et al.

GENES & DEVELOPMENT (2007)

Article Genetics & Heredity

The role of site accessibility in microRNA target recognition

Michael Kertesz et al.

NATURE GENETICS (2007)

Article Biochemical Research Methods

Bayesian inference of microRNA targets from sequence and expression data

Jim C. Huang et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2007)

Article Biochemical Research Methods

EBIMed - text crunching to gather facts for proteins from Medline

Dietrich Rebholz-Schuhmann et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

RNAhybrid:: microRNA target prediction easy, fast and flexible

Jan Krueger et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

EPD in its twentieth year: towards complete promoter coverage of selected model organisms

Christoph D. Schmid et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Genetics & Heredity

Combinatorial microRNA target predictions

A Krek et al.

NATURE GENETICS (2005)

Article Biochemistry & Molecular Biology

The Gene Ontology (GO) database and informatics resource

MA Harris et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

DNA binding sites: representation and discovery

GD Stormo

BIOINFORMATICS (2000)