Journal
NUCLEIC ACIDS RESEARCH
Volume 39, Issue -, Pages D876-D882Publisher
OXFORD UNIV PRESS
DOI: 10.1093/nar/gkq963
Keywords
-
Categories
Funding
- NHGRI [P41HG002371, U41HG004568, P01HG5062, U54HG004555, U41HG004269, U01HG004695]
- NCI [U24CA143858]
- NIDCR [U01DE20057]
- NICHD [RC2HD064525]
- NIEHS [U01ES017154]
- HHMI
- EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH &HUMAN DEVELOPMENT [RC2HD064525] Funding Source: NIH RePORTER
- NATIONAL CANCER INSTITUTE [U24CA143858] Funding Source: NIH RePORTER
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [P01HG005062, U41HG004269, U01HG004695, P41HG002371, U54HG004555, U41HG004568] Funding Source: NIH RePORTER
- NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH [U01DE020057] Funding Source: NIH RePORTER
- NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES [U01ES017154] Funding Source: NIH RePORTER
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The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of organisms. The Browser also has many tools for visualizing, comparing and analyzing both publicly available and user-generated genomic data sets, aligning sequences and uploading user data. Among the features released this year are a gene search tool and annotation track drag-reorder functionality as well as support for BAM and BigWig/BigBed file formats. New display enhancements include overlay of multiple wiggle tracks through use of transparent coloring, options for displaying transformed wiggle data, a 'mean+whiskers' windowing function for display of wiggle data at high zoom levels, and more color schemes for microarray data. New data highlights include seven new genome assemblies, a Neandertal genome data portal, phenotype and disease association data, a human RNA editing track, and a zebrafish Conservation track. We also describe updates to existing tracks.
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