4.8 Article

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

Elodie Portales-Casamar et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

The Universal Protein Resource (UniProt) in 2010

Rolf Apweiler et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing

Artem Zykovich et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

FlyBase: enhancing Drosophila Gene Ontology annotations

Susan Tweedie et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

Daniel E. Newburger et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemical Research Methods

Inferring Binding Energies from Selected Binding Sites

Yue Zhao et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation

Edgar Wingender

BRIEFINGS IN BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Predicting expression patterns from regulatory sequence in Drosophila segmentation

Eran Segal et al.

NATURE (2008)

Article Multidisciplinary Sciences

The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila

Hsiao-Lan Liang et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

Marcus B. Noyes et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

Xiao-Yong Li et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila

Marc S. Halfon et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Reliable prediction of regulator targets using 12 Drosophila genomes

Pouya Kheradpour et al.

GENOME RESEARCH (2007)

Article Multidisciplinary Sciences

Genome-wide mapping of in vivo protein-DNA interactions

David S. Johnson et al.

SCIENCE (2007)

Article Biotechnology & Applied Microbiology

FlyMine: an integrated database for Drosophila and Anopheles genomics

Rachel Lyne et al.

GENOME BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Quantifying similarity between motifs

Shobhit Gupta et al.

GENOME BIOLOGY (2007)

Article Biochemistry & Molecular Biology

MEME: discovering and analyzing DNA and protein sequence motifs

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Developmental Biology

The TAGteam DNA motif controls the timing of Drosophila pre-blastoderm transcription

JR ten Bosch et al.

DEVELOPMENT (2006)

Article Biochemistry & Molecular Biology

TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes

V. Matys et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biotechnology & Applied Microbiology

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

XD Meng et al.

NATURE BIOTECHNOLOGY (2005)

Article Biochemistry & Molecular Biology

Transcriptional control in the segmentation gene network of Drosophila

MD Schroeder et al.

PLOS BIOLOGY (2004)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Article Biotechnology & Applied Microbiology

High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites

E Roulet et al.

NATURE BIOTECHNOLOGY (2002)

Article Multidisciplinary Sciences

Genome-wide location and function of DNA binding proteins

B Ren et al.

SCIENCE (2000)

Article Biochemical Research Methods

DNA binding sites: representation and discovery

GD Stormo

BIOINFORMATICS (2000)

Article Biochemistry & Molecular Biology

TRANSFAC: an integrated system for gene expression regulation

E Wingender et al.

NUCLEIC ACIDS RESEARCH (2000)