4.8 Article

SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells

Related references

Note: Only part of the references are listed.
Article Pathology

MiRNAs and Cancer

Rosa Visone et al.

AMERICAN JOURNAL OF PATHOLOGY (2009)

Article Biochemical Research Methods

microPred: effective classification of pre-miRNAs for human miRNA gene prediction

Rukshan Batuwita et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

Wei-Chi Wang et al.

BMC BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

Kei Iida et al.

BMC GENOMICS (2009)

Editorial Material Biochemistry & Molecular Biology

SnapShot: MicroRNAs in Cancer

Riccardo Spizzo et al.

Review Biochemistry & Molecular Biology

Origins and Mechanisms of miRNAs and siRNAs

Richard W. Carthew et al.

Article Biotechnology & Applied Microbiology

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

Joel Rozowsky et al.

NATURE BIOTECHNOLOGY (2009)

Review Genetics & Heredity

Small silencing RNAs: an expanding universe

Megha Ghildiyal et al.

NATURE REVIEWS GENETICS (2009)

Review Cell Biology

Revisiting the principles of microRNA target recognition and mode of action

Peter Brodersen et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

Michael Hackenberg et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications

H. Alexander Ebhardt et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Computational and analytical framework for small RNA profiling by high-throughput sequencing

Noah Fahlgren et al.

Review Neurosciences

Alterations of the microRNA network cause neurodegenerative disease

Sebastien S. Hebert et al.

TRENDS IN NEUROSCIENCES (2009)

Article Biochemical Research Methods

SOAP: short oligonucleotide alignment program

Ruiqiang Li et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

In-depth characterization of the microRNA transcriptome in a leukemia progression model

Florian Kuchenbauer et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

Ryan D. Morin et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice

Alexei A. Aravin et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

Oliver H. Tam et al.

NATURE (2008)

Article Biochemical Research Methods

Computational analysis of small RNA cloning data

Philipp Berninger et al.

METHODS (2008)

Article Biochemistry & Molecular Biology

Frequency and fate of microRNA editing in human brain

Yukio Kawahara et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Juliane C. Dohm et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells

Margaret S. Ebert et al.

NATURE METHODS (2007)

Article Biochemistry & Molecular Biology

RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex

Yukio Kawahara et al.

EMBO REPORTS (2007)

Article Biochemistry & Molecular Biology

MicroRNA targeting specificity in mammals: Determinants beyond seed pairing

Andrew Grimson et al.

MOLECULAR CELL (2007)

Article Biochemistry & Molecular Biology

A mammalian microRNA expression atlas based on small RNA library sequencing

Pablo Landgraf et al.

Article Multidisciplinary Sciences

Redirection of silencing targets by adenosine-to-inosine editing of miRNAs

Yukio Kawahara et al.

SCIENCE (2007)

Article Biochemical Research Methods

Transcription factor map alignment of promoter regions

Enrique Blanco et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Genetics & Heredity

Approaches to microRNA discovery

Eugene Berezikov et al.

NATURE GENETICS (2006)

Article Biotechnology & Applied Microbiology

RNA editing of human microRNAs

Matthew J. Blow et al.

GENOME BIOLOGY (2006)

Review Biochemistry & Molecular Biology

Identification and characterization of small RNAs involved in RNA silencing

A Aravin et al.

FEBS LETTERS (2005)

Correction Biochemistry & Molecular Biology

Human microRNA targets (vol 2, pg 1862, 2005)

B John et al.

PLOS BIOLOGY (2005)

Article Genetics & Heredity

Combinatorial microRNA target predictions

A Krek et al.

NATURE GENETICS (2005)

Article Biochemistry & Molecular Biology

Principles of MicroRNA-target recognition

J Brennecke et al.

PLOS BIOLOGY (2005)

Article Biochemistry & Molecular Biology

RNA editing of a miRNA precursor

DJ Luciano et al.