4.8 Article

An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Upregulated expression of miR-1/miR-206 in a rat model of myocardial infarction

Zhi-Xin Shan et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2009)

Article Biochemistry & Molecular Biology

Transcriptional regulation of hypoxia-inducible factor 1α by HIPK2 suggests a novel mechanism to restrain tumor growth

Lavinia Nardinocchi et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2009)

Article Biochemistry & Molecular Biology

Hypoxia upregulates the histone demethylase JMJDIA via HIF-1

Sven Wellmann et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Article Biochemistry & Molecular Biology

HIF-1α controls keratinocyte proliferation by up-regulating p21 (WAF1/Cip1)

Young-Suk Cho et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2008)

Review Cell Biology

Hypoxic regulation of mRNA expression

Lawrence B. Gardner et al.

CELL CYCLE (2008)

Review Biochemistry & Molecular Biology

The role of hypoxia-inducible factors in tumorigenesis

E. B. Rankin et al.

CELL DEATH AND DIFFERENTIATION (2008)

Article Biochemistry & Molecular Biology

PCAF is an HIF-1α cofactor that regulates p53 transcriptional activity in hypoxia

G. Xenaki et al.

ONCOGENE (2008)

Article Biochemistry & Molecular Biology

Transcriptional activators HAP/NF-Y rescue a cytochrome c oxidase defect in yeast and human cells

Flavia Fontanesi et al.

HUMAN MOLECULAR GENETICS (2008)

Article Biochemistry & Molecular Biology

Ubiquitination and degradation of homeodomain-interacting protein kinase 2 by WD40 repeat/SOCS box protein WSB-1

Dong Wook Choi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

The UCSC Genome Browser Database: 2008 update

D. Karolchik et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

Leah O. Barrera et al.

GENOME RESEARCH (2008)

Article Medicine, General & Internal

Brief report:: Cardiomyopathy and exercise intolerance in muscle glycogen storage disease 0

Gittan Kollberg et al.

NEW ENGLAND JOURNAL OF MEDICINE (2007)

Article Biochemistry & Molecular Biology

Modulating hypoxia-inducible transcription by disrupting the HIF-1-DNA interface

Nicholas G. Nickols et al.

ACS CHEMICAL BIOLOGY (2007)

Review Biochemistry & Molecular Biology

Oxygen-dependent regulation of mitochondrial respiration by hypoxia-inducible factor 1

Gregg L. Semenza

BIOCHEMICAL JOURNAL (2007)

Article Biochemical Research Methods

Statistical significance of cis-regulatory modules

Dustin E. Schones et al.

BMC BIOINFORMATICS (2007)

Article Biotechnology & Applied Microbiology

Reactome: a knowledge base of biologic pathways and processes

Imre Vastrik et al.

GENOME BIOLOGY (2007)

Article Biochemistry & Molecular Biology

ArrayExpress - a public database of microarray experiments and gene expression profiles

H. Parkinson et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Ankyrin repeat: A unique motif mediating protein-protein interactions

Junan Li et al.

BIOCHEMISTRY (2006)

Article Oncology

Role of hypoxia-inducible factor-1α as a cancer therapy target

Shalini Patiar et al.

ENDOCRINE-RELATED CANCER (2006)

Article Physiology

Hypoxia results in an HIF-1-dependent induction of brain-specific aldolase C in lung epithelial cells

Jyh-Chang Jean et al.

AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY (2006)

Article Multidisciplinary Sciences

Posttranslational hydroxylation of ankyrin repeats in IκB proteins by the hypoxia-inducible factor (HIF) asparaginyl hydroxylase, factor inhibiting HIF (FIH)

Matthew E. Cockman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Hypoxic regulation of vascular endothelial growth factor through the induction of phosphatidylinositol 3-kinase/Rho/ROCK and c-Myc

Yusuke Mizukami et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Multidisciplinary Sciences

DNA motifs in human and mouse proximal promoters predict tissue-specific expression

AD Smith et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

EDEM3, a soluble EDEM homolog, enhances glycoprotein endoplasmic reticulum-associated degradation and mannose trimming

K Hirao et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biotechnology & Applied Microbiology

Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT

Tom Hiu Cheung et al.

GENOME BIOLOGY (2006)

Article Cell Biology

Hypoxia requires Notch signaling to maintain the undifferentiated cell state

MV Gustafsson et al.

DEVELOPMENTAL CELL (2005)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel et al.

GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Contrasting properties of hypoxia-inducible factor 1 (HIF-1) and HIF-2 in von Hippel-Lindau-associated renal cell carcinoma

RR Raval et al.

MOLECULAR AND CELLULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Discovering functional transcription-factor combinations in the human cell cycle

Z Zhu et al.

GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Roles of the HIF-1 hypoxia-inducible factor during hypoxia response in Caenorhabditis elegans

C Shen et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Molecular mechanism of hypoxia-mediated hepatic gluconeogenesis by transcriptional regulation

JH Choi et al.

FEBS LETTERS (2005)

Article Multidisciplinary Sciences

De novo cis-regulatory module elicitation for eukaryotic genomes

M Gupta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Identifying tissue-selective transcription factor bindings sites in vertebrate promoters

AD Smith et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Database resources of the National Center for Biotechnology Information

DL Wheeler et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

InterPro, progress and status in 2005

NJ Mulder et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

The universal protein resource (UniProt)

A Bairoch et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

CisModule:: De novo discovery of' cis-regulatory modules by hierarchical mixture modeling

Q Zhou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Statistics & Probability

A model-based background adjustment for oligonucleotide expression arrays

ZJ Wu et al.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2004)

Article Multidisciplinary Sciences

Interacting models of cooperative gene regulation

D Das et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

The KEGG resource for deciphering the genome

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

E Camon et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biotechnology & Applied Microbiology

Bioconductor: open software development for computational biology and bioinformatics

RC Gentleman et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Identification of hypoxia-response element in the human endothelial nitric-oxide synthase gene promoter

F Coulet et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Biochemistry & Molecular Biology

The role of HIF-1α in transcriptional regulation of the proximal tubular epithelial cell response to hypoxia

MO Leonard et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Review Oncology

Targeting HIF-1 for cancer therapy

GL Semenza

NATURE REVIEWS CANCER (2003)

Article Biochemistry & Molecular Biology

Investigating hypoxic tumor physiology through gene expression patterns

NC Denko et al.

ONCOGENE (2003)

Article Multidisciplinary Sciences

Integrating regulatory motif discovery and genome-wide expression analysis

EM Conlon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Cell cycle-dependent regulation of pyrimidine biosynthesis

FD Sigoillot et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2003)

Article Biochemistry & Molecular Biology

Endoglin expression is regulated by transcriptional cooperation between the hypoxia and transforming growth factor-β pathways

T Sánchez-Elsner et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Review Immunology

NF-κB regulation in the immune system

QT Li et al.

NATURE REVIEWS IMMUNOLOGY (2002)

Article Biochemistry & Molecular Biology

Identification of a novel hypoxia-inducible factor 1-responsive gene, RTP801, involved in apoptosis

T Shoshani et al.

MOLECULAR AND CELLULAR BIOLOGY (2002)

Article Genetics & Heredity

Regulatory element detection using correlation with expression

HJ Bussemaker et al.

NATURE GENETICS (2001)

Article Biochemistry & Molecular Biology

Identification of two essential glutamic acid residues in glycogen synthase

E Cid et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Biochemistry & Molecular Biology

Interaction of the U3-55k protein with U3 snoRNA is mediated by the Box B/C motif of U3 and the WD repeats of U3-55k

AA Lukowiak et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Multidisciplinary Sciences

Activation of HIF1α ubiquitination by a reconstituted von Hippel-Lindau (VHL) tumor suppressor complex

T Kamura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Article Biochemistry & Molecular Biology

Hypoxia inducible factor-α binding and ubiquitylation by the von Hippel-Lindau tumor suppressor protein

ME Cockman et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Biochemistry & Molecular Biology

Hypoxic induction of prolyl 4-hydroxylase α(I) in cultured cells

Y Takahashi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)