4.8 Article

The IMGT/HLA database

Journal

NUCLEIC ACIDS RESEARCH
Volume 37, Issue -, Pages D1013-D1017

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/nar/gkn662

Keywords

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Funding

  1. Histogenetics
  2. Abbott Laboratories Inc
  3. American Society for Histocompatibility and Immunogenetics
  4. Anthony Nolan Trust
  5. BAG Healthcare
  6. Biotest
  7. European Federation for Immunogenetics
  8. Innogenetics
  9. Invitrogen
  10. Marrow Foundation
  11. National Marrow Donor Program
  12. One Lambda Inc
  13. Qiagen and Tepnel Lifecodes
  14. Imperial Cancer Research Fund (now Cancer Research UK)
  15. EU Biotech [BIO4CT960037]

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It is 10 years since the IMGT/HLA database was released, providing the HLA community with a searchable repository of highly curated HLA sequences. The HLA complex is located within the 6p21.3 region of human chromosome 6 and contains more than 220 genes of diverse function. Many of the genes encode proteins of the immune system and are highly polymorphic. The naming of these HLA genes and alleles, and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. Through the work of the HLA Informatics Group and in collaboration with the European Bioinformatics Institute, we are able to provide public access to this data through the website http://www.ebi.ac.uk/imgt/hla/. The first release contained 964 sequences, the most recent release 3300 sequences, with around 450 new sequences been added each year. The tools provided on the website have been updated to allow more complex alignments, which include genomic sequence data, as well as the development of tools for probe and primer design and the inclusion of data from the HLA Dictionary. Regular updates to the website ensure that new and confirmatory sequences are dispersed to the HLA community, and the wider research and clinical communities.

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