Related references
Note: Only part of the references are listed.A specific transcriptional response of yeast cells to camptothecin dependent on the Swi4 and Mbp1 factors
Luca Lotito et al.
EUROPEAN JOURNAL OF PHARMACOLOGY (2009)
Topological comparison of methods for predicting transcriptional cooperativity in yeast
Daniel Aguilar et al.
BMC GENOMICS (2008)
Defining genetic interaction
Ramamurthy Mani et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
High-quality binary protein interaction map of the yeast interactome network
Haiyuan Yu et al.
SCIENCE (2008)
Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae
Debayan Datta et al.
BIOINFORMATICS (2008)
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
Pedro T. Monteiro et al.
NUCLEIC ACIDS RESEARCH (2008)
A new framework for identifying combinatorial regulation of transcription factors: A case study of the yeast cell cycle
Junbai Wang
JOURNAL OF BIOMEDICAL INFORMATICS (2007)
Inferring transcriptional regulatory networks from high-throughput data
Rui-Sheng Wang et al.
BIOINFORMATICS (2007)
An Improved, Bias-Reduced Probabilistic Functional Gene Network of Baker's Yeast, Saccharomyces cerevisiae
Insuk Lee et al.
PLOS ONE (2007)
Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms
Anthony R. Borneman et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2007)
Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data
Naoki Nariai et al.
PLOS ONE (2007)
Identifying synergistic regulation involving c-Myc and sp1 in human tissues
Fabio Parisi et al.
NUCLEIC ACIDS RESEARCH (2007)
Transcriptional regulation of protein complexes within and across species
Kai Tan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Exploiting combinatorial cultivation conditions to infer transcriptional regulation
Theo A. Knijnenburg et al.
BMC GENOMICS (2007)
Transcriptional regulation by competing transcription factor modules
Rutger Hermsen et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
Xueping Yu et al.
NUCLEIC ACIDS RESEARCH (2006)
Inferring gene regulatory networks from multiple microarray datasets
Yong Wang et al.
BIOINFORMATICS (2006)
Evolution of alternative transcriptional circuits with identical logic
Annie E. Tsong et al.
NATURE (2006)
Identification of transcription factor cooperativity via stochastic system model
Yu-Hsiang Chang et al.
BIOINFORMATICS (2006)
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast
S. Balaji et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
A systems approach to mapping DNA damage response pathways
CT Workman et al.
SCIENCE (2006)
Diffusion kernel-based logistic regression models for protein function prediction
Hyunju Lee et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2006)
Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae
XP Yu et al.
NUCLEIC ACIDS RESEARCH (2006)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
Miguel C. Teixeira et al.
NUCLEIC ACIDS RESEARCH (2006)
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
Richard Bonneau et al.
GENOME BIOLOGY (2006)
Statistical methods for identifying yeast cell cycle transcription factors
HK Tsai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Yeast recombination enhancer is stimulated by transcription activation
S Ercan et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
High functional overlap between MluI cell-cycle box binding factor and Swi4/6 cell-cycle box binding factor in the G1/S transcriptional program in Saccharomyces cerevisiae
JM Bean et al.
GENETICS (2005)
Assessing the limits of genomic data integration for predicting protein networks
LJ Lu et al.
GENOME RESEARCH (2005)
Inferring yeast cell cycle regulators and interactions using transcription factor activities
YL Yang et al.
BMC GENOMICS (2005)
Discovering functional transcription-factor combinations in the human cell cycle
Z Zhu et al.
GENOME RESEARCH (2005)
Combinatorial microRNA target predictions
A Krek et al.
NATURE GENETICS (2005)
Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation
W Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Prediction of functional modules based on comparative genome analysis and Gene Ontology application
HW Wu et al.
NUCLEIC ACIDS RESEARCH (2005)
Identifying cooperative transcriptional regulations using protein-protein interactions
N Nagamine et al.
NUCLEIC ACIDS RESEARCH (2005)
Inferring combinatorial regulation of transcription in silico
N Bluthgen et al.
NUCLEIC ACIDS RESEARCH (2005)
Predicting gene expression from sequence
MA Beer et al.
CELL (2004)
Inferring cellular networks using probabilistic graphical models
N Friedman
SCIENCE (2004)
Genomic analysis of regulatory network dynamics reveals large topological changes
NM Luscombe et al.
NATURE (2004)
Transcriptional regulatory code of a eukaryotic genome
CT Harbison et al.
NATURE (2004)
A probabilistic functional network of yeast genes
I Lee et al.
SCIENCE (2004)
Interacting models of cooperative gene regulation
D Das et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae
Y Chen et al.
NUCLEIC ACIDS RESEARCH (2004)
Prolinks: a database of protein functional linkages derived from coevolution
PM Bowers et al.
GENOME BIOLOGY (2004)
Identifying cooperativity among transcription factors controlling the cell cycle in yeast
N Banerjee et al.
NUCLEIC ACIDS RESEARCH (2003)
Evolution of a combinatorial transcriptional circuit: A case study in yeasts
AE Tsong et al.
CELL (2003)
A Bayesian networks approach for predicting protein-protein interactions from genomic data
R Jansen et al.
SCIENCE (2003)
Genomic analysis of gene expression relationships in transcriptional regulatory networks
HY Yu et al.
TRENDS IN GENETICS (2003)
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)
OG Troyanskaya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
On schemes of combinatorial transcription logic
NE Buchler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Osprey: a network visualization system
BJ Breitkreutz et al.
GENOME BIOLOGY (2003)
Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae
CE Horak et al.
GENES & DEVELOPMENT (2002)
Transcriptional regulatory networks in Saccharomyces cerevisiae
TI Lee et al.
SCIENCE (2002)
Predicting transcription factor synergism
S Hannenhalli et al.
NUCLEIC ACIDS RESEARCH (2002)
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
Y Ho et al.
NATURE (2002)
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
H Ge et al.
NATURE GENETICS (2001)
Identifying regulatory networks by combinatorial analysis of promoter elements
Y Pilpel et al.
NATURE GENETICS (2001)
The Gal4 activation domain binds Sug2 protein, a proteasome component, in vivo and in vitro
C Chang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Adr1 and Cat8 synergistically activate the glucose-regulated alcohol dehydrogenase gene ADH2 of the yeast Saccharomyces cerevisiae
K Walther et al.
MICROBIOLOGY-SGM (2001)
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
VR Iyer et al.
NATURE (2001)
Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase
R Kumar et al.
CURRENT BIOLOGY (2000)
Using Bayesian networks to analyze expression data
N Friedman et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)