4.8 Article

Inferred Biomolecular Interaction Server-a web server to analyze and predict protein interacting partners and binding sites

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

WSsas: a web service for the annotation of functional residues through structural homologues

David Talavera et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

SITEHOUND-web: a server for ligand binding site identification in protein structures

Marylens Hernandez et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

3did Update: domain-domain and peptide-mediated interactions of known 3D structure

Amelie Stein et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

CDD: specific functional annotation with the Conserved Domain Database

Aron Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

PubChem: a public information system for analyzing bioactivities of small molecules

Yanli Wang et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Biotechnology & Applied Microbiology

Protein function prediction - the power of multiplicity

Robert Rentzsch et al.

TRENDS IN BIOTECHNOLOGY (2009)

Article Multidisciplinary Sciences

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

Michal Brylinski et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

meta-PPISP: a meta web server for protein-protein interaction site prediction

Sanbo Qin et al.

BIOINFORMATICS (2007)

Review Biochemistry & Molecular Biology

Inference of macromolecular assemblies from crystalline state

Evgeny Krissinel et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

3D-partner: a web server to infer interacting partners and binding models

Yung-Chiang Chen et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

MMDB: annotating protein sequences with Entrez's 3D-structure database

Yanli Wang et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

Domain-based small molecule binding site annotation

KA Snyder et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Finding biologically relevant protein domain interactions: Conserved binding mode analysis

BA Shoemaker et al.

PROTEIN SCIENCE (2006)

Article Multidisciplinary Sciences

Information-based clustering

N Slonim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemical Research Methods

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

ATR Laurie et al.

BIOINFORMATICS (2005)

Article Multidisciplinary Sciences

A map of the interactome network of the metazoan C-elegans

SM Li et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase

S Atwell et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

CD-Search: protein domain annotations on the fly

A Marchler-Bauer et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs

HY Yu et al.

GENOME RESEARCH (2004)

Article Multidisciplinary Sciences

Automated prediction of protein function and detection of functional sites from structure

F Pazos et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

A protein interaction map of Drosophila melanogaster

L Giot et al.

SCIENCE (2003)

Review Biochemistry & Molecular Biology

Ligand binding: functional site location, similarity and docking

SJ Campbell et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2003)

Article Biochemistry & Molecular Biology

MMDB: Entrez's 3D-structure database

J Chen et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Determination of protein function, evolution and interactions by structural genomics

SA Teichmann et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

R Landgraf et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Links from genome proteins to known 3-D structures

YL Wang et al.

GENOME RESEARCH (2000)