4.8 Article

Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Extrapolation of metabolic pathways as an aid to modelling completely sequenced non Saccharomyces yeasts

Florian Iragne et al.

FEMS YEAST RESEARCH (2008)

Article Biochemical Research Methods

Fusion and Fission of Genes Define a Metric between Fungal Genomes

Pascal Durrens et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

MIPS: analysis and annotation of genome information in 2007

H. W. Mewes et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

Family relationships: should consensus reign? - consensus clustering for protein families

Macha Nikolski et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Expanded protein information at SGD: new pages and proteome browser

Robert Nash et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Genetics & Heredity

Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution

Bernard Dujon

TRENDS IN GENETICS (2006)

Article Genetics & Heredity

Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages

Gilles Fischer et al.

PLOS GENETICS (2006)

Article Biochemistry & Molecular Biology

Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts

David Sherman et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy

A Rokas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biotechnology & Applied Microbiology

Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts

LM Blank et al.

FEMS YEAST RESEARCH (2005)

Article Biochemistry & Molecular Biology

Comparative genomics of hemiascomycete yeasts: Genes involved in DNA replication, repair, and recombination

GF Richard et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Comparative genomics in hemiascomycete yeasts: Evolution of sex, silencing, and subtelomeres

E Fabre et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biotechnology & Applied Microbiology

The Sequence Ontology: a tool for the unification of genome annotations

K Eilbeck et al.

GENOME BIOLOGY (2005)

Article Biochemistry & Molecular Biology

The EMBL nucleotide sequence database

C Kanz et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

The universal protein resource (UniProt)

A Bairoch et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

Genome evolution in yeasts

B Dujon et al.

NATURE (2004)

Article Biochemistry & Molecular Biology

PIRSF: family classification system at the Protein Information Resource

CH Wu et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts

D Sherman et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Building genomic profiles for uncovering segmental homology in the twilight zone

C Simillion et al.

GENOME RESEARCH (2004)

Article Biochemical Research Methods

The COG database: an updated version includes eukaryotes

RL Tatusov et al.

BMC BIOINFORMATICS (2003)

Article Multidisciplinary Sciences

Finding functional features in Saccharomyces genomes by phylogenetic footprinting

P Cliften et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

The Generic Genome Browser: A building block for a model organism system database

LD Stein et al.

GENOME RESEARCH (2002)

Article Biochemistry & Molecular Biology

An efficient algorithm for large-scale detection of protein families

AJ Enright et al.

NUCLEIC ACIDS RESEARCH (2002)

Review Microbiology

A functional-phylogenetic classification system for transmembrane solute transporters

MH Saier

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)