Related references
Note: Only part of the references are listed.Reliable prediction of regulator targets using 12 Drosophila genomes
Pouya Kheradpour et al.
GENOME RESEARCH (2007)
Genome-wide mapping of in vivo protein-DNA interactions
David S. Johnson et al.
SCIENCE (2007)
High-resolution profiling of histone methylations in the human genome
Artern Barski et al.
CELL (2007)
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo
Julia Zeitlinger et al.
GENES & DEVELOPMENT (2007)
Global analysis of patterns of gene expression during Drosophila embryogenesis
Pavel Tomancak et al.
GENOME BIOLOGY (2007)
Mapping networks of physical interactions between genomic elements using 5C technology
Josee Dostie et al.
NATURE PROTOCOLS (2007)
DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations
Christian Hoffmann et al.
NUCLEIC ACIDS RESEARCH (2007)
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
Michael F. Berger et al.
NATURE BIOTECHNOLOGY (2006)
On the dynamic nature of positional information
Johannes Jaeger et al.
BIOESSAYS (2006)
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
Josee Dostie et al.
GENOME RESEARCH (2006)
On counting position weight matrix matches in a sequence, with application to discriminative motif finding
Saurabh Sinha
BIOINFORMATICS (2006)
FlyTF:: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster
Boris Adryan et al.
BIOINFORMATICS (2006)
A bacterial one-hybrid selection system for interrogating zinc finger-DNA interactions
Sundar Durai et al.
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2006)
REDfly:: A regulatory element database for Drosophila
SM Gallo et al.
BIOINFORMATICS (2006)
Identifying DNA sequences recognized by a transcription factor using a bacterial one-hybrid system
Xiangdong Meng et al.
NATURE PROTOCOLS (2006)
Modulating Hox gene functions during animal body patterning
JC Pearson et al.
NATURE REVIEWS GENETICS (2005)
Arthropod segmentation:: Beyond the Drosophila paradigm
AD Peel et al.
NATURE REVIEWS GENETICS (2005)
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel et al.
GENOME RESEARCH (2005)
A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors
XD Meng et al.
NATURE BIOTECHNOLOGY (2005)
Drosophila DNase I footprint database:: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
CM Bergman et al.
BIOINFORMATICS (2005)
Genome-wide identification of DNasel hypersensitive sites using active chromatin sequence libraries
PJ Sabo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
F Gao et al.
BMC BIOINFORMATICS (2004)
Quantitative high-throughput analysis of transcription factor binding specificities
J Linnell et al.
NUCLEIC ACIDS RESEARCH (2004)
Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites
GE Crawford et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
S Sinha et al.
BMC BIOINFORMATICS (2004)
Transcriptional regulatory code of a eukaryotic genome
CT Harbison et al.
NATURE (2004)
Transcriptional control in the segmentation gene network of Drosophila
MD Schroeder et al.
PLOS BIOLOGY (2004)
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
S Mukherjee et al.
NATURE GENETICS (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
BP Berman et al.
GENOME BIOLOGY (2004)
A self-organizing system of repressor gradients establishes segmental complexity in Drosophila
DE Clyde et al.
NATURE (2003)
Transcription regulation and animal diversity
M Levine et al.
NATURE (2003)
Target Explorer: an automated tool for the identification of new target genes for a specified set of transcription factors
A Sosinsky et al.
NUCLEIC ACIDS RESEARCH (2003)
A probabilistic method to detect regulatory modules
Saurabh Sinha et al.
BIOINFORMATICS (2003)
Homotypic regulatory clusters in Drosophila
AP Lifanov et al.
GENOME RESEARCH (2003)
Transcriptional regulatory networks in Saccharomyces cerevisiae
TI Lee et al.
SCIENCE (2002)
The Generic Genome Browser: A building block for a model organism system database
LD Stein et al.
GENOME RESEARCH (2002)
High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
E Roulet et al.
NATURE BIOTECHNOLOGY (2002)
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
BP Berman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo
M Markstein et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Rearrangement of side-chains in a zif268 mutant highlights the complexities of zinc finger-DNA recognition
JC Miller et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
JD Lieb et al.
NATURE GENETICS (2001)
Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
ML Bulyk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Evidence for stabilizing selection in a eukaryotic enhancer element
MZ Ludwig et al.
NATURE (2000)
Share Paper
