Related references
Note: Only part of the references are listed.Communication between RNA folding domains revealed by folding of circularly permuted Ribozymes
Richard A. Lease et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein
Sayan Gupta et al.
BIOCHEMISTRY (2007)
The ENCODEdb portal: Simplified access to ENCODE consortium data
Laura Elnitski et al.
GENOME RESEARCH (2007)
Coplanar and coaxial orientations of RNA bases and helices
Alain Laederach et al.
RNA (2007)
Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding protein
Sergei Khrapunov et al.
BIOCHEMISTRY (2007)
Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding
Alain Laederach et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
Stefanie A. Mortimer et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Local RNA structural changes induced by crystallization are revealed by SHAPE
Quentin Vicens et al.
RNA (2007)
ENCODE: More genomic empowerment
George M. Weinstock
GENOME RESEARCH (2007)
The paradoxical behavior of a highly structured misfolded intermediate in RNA folding
Rick Russell et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
A trace of silence: memory and microRNA at the synapse
Shovan I. Ashraf et al.
CURRENT OPINION IN NEUROBIOLOGY (2006)
Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule
Alain Laederach et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA
RO Sprouse et al.
EMBO JOURNAL (2006)
Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme
F Guo et al.
RNA (2006)
Selective 2 '-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution
Kevin A. Wilkinson et al.
NATURE PROTOCOLS (2006)
Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins
I Shcherbakova et al.
NUCLEIC ACIDS RESEARCH (2006)
Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation
Tadepalli Adilakshmi et al.
NUCLEIC ACIDS RESEARCH (2006)
Protein-independent folding pathway of the 16 S rRNA 5′ domain
T Adilakshmi et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
RNA flexibility in the dimerization domain of a gamma retrovirus
CS Badorrek et al.
NATURE CHEMICAL BIOLOGY (2005)
RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNAAsp transcripts
KA Wilkinson et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments
R Das et al.
RNA (2005)
Recurrent structural RNA motifs, isostericity matrices and sequence alignments
A Lescoute et al.
NUCLEIC ACIDS RESEARCH (2005)
Rfam: annotating non-coding RNAs in complete genomes
S Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2005)
GFINDer:: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining
M Masseroli et al.
NUCLEIC ACIDS RESEARCH (2004)
Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions
K Takamoto et al.
NUCLEIC ACIDS RESEARCH (2004)
Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme
I Shcherbakova et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
The fastest global events in RNA folding: Electrostatic relaxation and tertiary collapse of the tetrahymena ribozyme
R Das et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
CM Duarte et al.
NUCLEIC ACIDS RESEARCH (2003)
Assembly of the 30S ribosomal subunit
GM Culver
BIOPOLYMERS (2003)
Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical 'footprinting'
M Brenowitz et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)
Rapid mapping of protein structure, interactions, and ligand binding by misincorporation proton-alkyl exchange
JA Silverman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Custom fluorescent-nucleotide synthesis as an alternative method for nucleic acid labeling
O Henegariu et al.
NATURE BIOTECHNOLOGY (2000)
Share Paper
