Related references
Note: Only part of the references are listed.Multi-locus phylogenetics, lineage sorting, and reticulation in Pinus subsection Australes
David S. Gernandt et al.
AMERICAN JOURNAL OF BOTANY (2018)
New prospects in the detection and comparative analysis of hybridization in the tree of life
Ryan A. Folk et al.
AMERICAN JOURNAL OF BOTANY (2018)
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
Diego F. Morales-Briones et al.
NEW PHYTOLOGIST (2018)
The on-again, off-again relationship between mitochondrial genomes and species boundaries
Daniel B. Sloan et al.
MOLECULAR ECOLOGY (2017)
Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
Nicolas Garcia et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)
Selection on the mitochondrial ATP synthase 6 and the NADH dehydrogenase 2 genes in hares (Lepus capensis L.,1758) from a steep ecological gradient in North Africa
Hichem Ben Slimen et al.
BMC EVOLUTIONARY BIOLOGY (2017)
Genome-wide genotyping-by-sequencing data provide a high-resolution view of wild Helianthus diversity, genetic structure, and interspecies gene flow
Gregory J. Baute et al.
AMERICAN JOURNAL OF BOTANY (2016)
Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species
K. Harrisson et al.
HEREDITY (2016)
Revisiting a classic case of introgression: hybridization and gene flow in Californian sunflowers
Gregory L. Owens et al.
MOLECULAR ECOLOGY (2016)
Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.)
Christopher J. Grassa et al.
GENOME ANNOUNCEMENTS (2016)
SPECIES TREE ESTIMATION OF DIPLOID HELIANTHUS (ASTERACEAE) USING TARGET ENRICHMENT
Jessica D. Stephens et al.
AMERICAN JOURNAL OF BOTANY (2015)
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Yongwook Choi et al.
BIOINFORMATICS (2015)
Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance
Hernan E. Morales et al.
MOLECULAR ECOLOGY (2015)
Automation and Evaluation of the SOWH Test with SOWHAT
Samuel H. Church et al.
SYSTEMATIC BIOLOGY (2015)
Patterns of natural selection acting on the mitochondrial genome of a locally adapted fish species
Sofia Consuegra et al.
GENETICS SELECTION EVOLUTION (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression
Jose Melo-Ferreira et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke
Dan G. Bock et al.
NEW PHYTOLOGIST (2014)
Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P-trichocarpa (Salicaceae)
Daisie I. Huang et al.
NEW PHYTOLOGIST (2014)
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
Bastian Pfeifer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Sequential adaptive introgression of the mitochondrial genome in Drosophila yakuba and Drosophila santomea
Ana Llopart et al.
MOLECULAR ECOLOGY (2014)
On the adaptive value of cytoplasmic genomes in plants
Dan G. Bock et al.
MOLECULAR ECOLOGY (2014)
Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population
Susan F. Bailey et al.
NATURE COMMUNICATIONS (2014)
Cytonuclear Genomic Interactions and Hybrid Breakdown
Ronald S. Burton et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)
Strong nuclear differentiation contrasts with widespread sharing of plastid DNA haplotypes across taxa in European purple saxifrages (Saxifraga section Porphyrion subsection Oppositifoliae)
Manuela Winkler et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2013)
NAVIGATING THE TIP OF THE GENOMIC ICEBERG: NEXT-GENERATION SEQUENCING FOR PLANT SYSTEMATICS
Shannon C. K. Straub et al.
AMERICAN JOURNAL OF BOTANY (2012)
Local Adaptation along Smooth Ecological Gradients Causes Phylogeographic Breaks and Phenotypic Clustering
Darren E. Irwin
AMERICAN NATURALIST (2012)
Adaptive evolution of the rbcL gene in Brassicaceae
Lei Liu et al.
BIOCHEMICAL SYSTEMATICS AND ECOLOGY (2012)
RECONCILING EXTREMELY STRONG BARRIERS WITH HIGH LEVELS OF GENE EXCHANGE IN ANNUAL SUNFLOWERS
Julianno B. M. Sambatti et al.
EVOLUTION (2012)
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
David Bryant et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
The biogeography of mitochondrial and nuclear discordance in animals
David P. L. Toews et al.
MOLECULAR ECOLOGY (2012)
JML: testing hybridization from species trees
Simon Joly
MOLECULAR ECOLOGY RESOURCES (2012)
Sorting through the chaff, nDNA gene trees for phylogenetic inference and hybrid identification of annual sunflowers (Helianthus sect. Helianthus)
Michael L. Moody et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Estimation of the Neutrality Index
Nina Stoletzki et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
pegas: an R package for population genetics with an integrated-modular approach
Emmanuel Paradis
BIOINFORMATICS (2010)
A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
Simon Joly et al.
AMERICAN NATURALIST (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Molecular Adaptation of rbcL in the Heterophyllous Aquatic Plant Potamogeton
Satoko Iida et al.
PLOS ONE (2009)
Ecological selection maintains cytonuclear incompatibilities in hybridizing sunflowers
Julianno B. M. Sambatti et al.
ECOLOGY LETTERS (2008)
Effective population size and tests of neutrality at cytoplasmic genes in Arabidopsis
Stephen I. Wright et al.
GENETICS RESEARCH (2008)
Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
Guy Drouin et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
Adaptation from standing genetic variation
Rowan D. H. Barrett et al.
TRENDS IN ECOLOGY & EVOLUTION (2008)
High-resolution phylogeny for Helianthus (Asteraceae) using the 18s-26s ribosomal DNA external transcribed spacer
Ruth E. Timme et al.
AMERICAN JOURNAL OF BOTANY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Modeling amino acid substitution patterns in orthologous and paralogous genes
Gavin C. Conant et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
Cytoplasmic male sterility: a window to the world of plant mitochondrial-nuclear interactions
Christine D. Chase
TRENDS IN GENETICS (2007)
Solving the protein sequence metric problem
WR Atchley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Bayes empirical Bayes inference of amino acid sites under positive selection
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
HyPhy: hypothesis testing using phylogenies
SLK Pond et al.
BIOINFORMATICS (2005)
The incomplete natural history of mitochondria
JWO Ballard et al.
MOLECULAR ECOLOGY (2004)
The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective
V Knoop
CURRENT GENETICS (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Accuracy and power of Bayes prediction of amino acid sites under positive selection
M Anisimova et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
M Anisimova et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes
A Drescher et al.
PLANT JOURNAL (2000)
Share Paper
