Related references
Note: Only part of the references are listed.Pentatricopeptide Repeat Proteins Constrain Genome Evolution in Chloroplasts
Michael L. Hayes et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1
Anne-Laure Chateigner-Boutin et al.
PLANT JOURNAL (2011)
Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
Jana Prikryl et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
Sota Fujii et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Chloroplast RNA Metabolism
David B. Stern et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 (2010)
Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes
Sota Fujii et al.
BMC GENOMICS (2010)
The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility
Lillian K. Fritz-Laylin et al.
CELL (2010)
DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?
Volker Knoop et al.
FEBS LETTERS (2010)
The involvement of a PPR protein of the P subfamily in partial RNA editing of an Arabidopsis mitochondrial transcript
Yoko Doniwa et al.
GENE (2010)
The Nuclear Component of a Cytonuclear Hybrid Incompatibility in Mimulus Maps to a Cluster of Pentatricopeptide Repeat Genes
Camille M. Barr et al.
GENETICS (2010)
Extensive Loss of RNA Editing Sites in Rapidly Evolving Silene Mitochondrial Genomes: Selection vs. Retroprocessing as the Driving Force
Daniel B. Sloan et al.
GENETICS (2010)
Reverse Genetic Screening Identifies Five E-class PPR Proteins Involved in RNA Editing in Mitochondria of Arabidopsis thaliana
Mizuki Takenaka et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Targeted Gene Disruption Identifies Three PPR-DYW Proteins Involved in RNA Editing for Five Editing Sites of the Moss Mitochondrial Transcripts
Shotaro Ohtani et al.
PLANT AND CELL PHYSIOLOGY (2010)
The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria
Tzu-Ying Sung et al.
PLANT JOURNAL (2010)
The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana
Daniil Verbitskiy et al.
PLANT JOURNAL (2010)
The mitochondrial PPR protein LOVASTATIN INSENSITIVE 1 plays regulatory roles in cytosolic and plastidial isoprenoid biosynthesis through RNA editing
Jianwei Tang et al.
PLANT JOURNAL (2010)
The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript
Eiji Tasaki et al.
PLANT JOURNAL (2010)
Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant
Ching-Chih Tseng et al.
PLANT MOLECULAR BIOLOGY (2010)
MEF9, an E-Subclass Pentatricopeptide Repeat Protein, Is Required for an RNA Editing Event in the nad7 Transcript in Mitochondria of Arabidopsis
Mizuki Takenaka
PLANT PHYSIOLOGY (2010)
Natural Variation in Arabidopsis Leads to the Identification of REME1, a Pentatricopeptide Repeat-DYW Protein Controlling the Editing of Mitochondrial Transcripts
Stephane Bentolila et al.
PLANT PHYSIOLOGY (2010)
Plant RNA editing
Anne-Laure Chateigner-Boutin et al.
RNA BIOLOGY (2010)
Loss of matK RNA editing in seed plant chloroplasts
Michael Tillich et al.
BMC EVOLUTIONARY BIOLOGY (2009)
Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts
Jeannette Pfalz et al.
EMBO JOURNAL (2009)
RNA Editing in Plant Mitochondria: 20 Years Later
Michael W. Gray
IUBMB LIFE (2009)
The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
Jeffrey P. Mower
NUCLEIC ACIDS RESEARCH (2009)
RESOPS: A Database for Analyzing the Correspondence of RNA Editing Sites to Protein Three-Dimensional Structures
Kei Yura et al.
PLANT AND CELL PHYSIOLOGY (2009)
Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts
Kenji Okuda et al.
PLANT CELL (2009)
A DYW Domain-Containing Pentatricopeptide Repeat Protein Is Required for RNA Editing at Multiple Sites in Mitochondria of Arabidopsis thaliana
Anja Zehrmann et al.
PLANT CELL (2009)
A Study of New Arabidopsis Chloroplast RNA Editing Mutants Reveals General Features of Editing Factors and Their Target Sites
Kamel Hammani et al.
PLANT CELL (2009)
The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth
Wenbin Zhou et al.
PLANT JOURNAL (2009)
AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana
Qing-Bo Yu et al.
PLANT JOURNAL (2009)
Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria
Sung-Ryul Kim et al.
PLANT JOURNAL (2009)
Unparalleled GC content in the plastid DNA of Selaginella
David Roy Smith
PLANT MOLECULAR BIOLOGY (2009)
LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis
Wenhe Cai et al.
PLANT PHYSIOLOGY (2009)
A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript
John C. Robbins et al.
RNA (2009)
Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?
Richard W. Jobson et al.
BIOLOGY DIRECT (2008)
Complex chloroplast RNA metabolism:: just debugging the genetic programme?
Uwe G. Maier et al.
BMC BIOLOGY (2008)
The process of RNA editing in plant mitochondria
Mizuki Takenaka et al.
MITOCHONDRION (2008)
Angiosperm mitochondrial genomes and mutations
Tornohiko Kubo et al.
MITOCHONDRION (2008)
Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts
Mareike Ruedinger et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
On the expansion of the pentatricopeptide repeat gene family in plants
Nicholas O'Toole et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Characterization of Raphanus sativus Pentatricopeptide Repeat Proteins Encoded by the Fertility Restorer Locus for Ogura Cytoplasmic Male Sterility
M. Uyttewaal et al.
PLANT CELL (2008)
CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts
Anne-Laure Chateigner-Boutin et al.
PLANT JOURNAL (2008)
Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
Tomohiko Kazama et al.
PLANT JOURNAL (2008)
Pentatricopeptide repeat proteins: a socket set for organelle gene expression
Christian Schmitz-Linneweber et al.
TRENDS IN PLANT SCIENCE (2008)
Exploring plant biodiversity: the Physcomitrella genome and beyond
Daniel Lang et al.
TRENDS IN PLANT SCIENCE (2008)
The pentatricopeptide repeats present in pet309 are necessary for translation but not for stability of the mitochondrial COX1 mRNA in yeast
Faviola Tavares-Carreon et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
Stefan A. Rensing et al.
SCIENCE (2008)
Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles
E. Delannoy et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2007)
Structural diversity and evolution of the Rf-1 locus in the genus Oryza
H. Kato et al.
HEREDITY (2007)
The Chlamydomonas genome reveals the evolution of key animal and plant functions
Sabeeha S. Merchant et al.
SCIENCE (2007)
Pentatricopeptide repeat proteins in trypanosoma brucei function in mitochondrial ribosomes
Mascha Pusnik et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize
James O. Allen et al.
GENETICS (2007)
A hypothesis on the identification of the editing enzyme in plant organelles
Veronique Salone et al.
FEBS LETTERS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Pentatricopeptide repeat proteins and their emerging roles in plants
D. Saha et al.
PLANT PHYSIOLOGY AND BIOCHEMISTRY (2007)
Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection
Rachel Geddy et al.
BMC GENOMICS (2007)
Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing
Kenji Okuda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The multifarious roles of PPR proteins in plant mitochondrial gene expression
Charles Andres et al.
PHYSIOLOGIA PLANTARUM (2007)
Evolution of a pseudogene: Exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in marchantiidae
Milena Groth-Malonek et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
The evolution of chloroplast RNA editing
Michael Tillich et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Formation of the Arabidopsis pentatricopeptide repeat family
Eric Rivals et al.
PLANT PHYSIOLOGY (2006)
Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing
ZH Wang et al.
PLANT CELL (2006)
RNA editing in plant organelles: machinery, physiological function and evolution
T Shikanai
CELLULAR AND MOLECULAR LIFE SCIENCES (2006)
The rice mitochondrial genomes and their variations
XJ Tian et al.
PLANT PHYSIOLOGY (2006)
Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
CL Parkinson et al.
BMC EVOLUTIONARY BIOLOGY (2005)
RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5′ region of mRNAs whose translation it activates
C Schmitz-Linneweber et al.
PLANT CELL (2005)
Solar ultraviolet radiation-induced DNA damage in aquatic organisms:: potential environmental impact
DP Häder et al.
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2005)
The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants
Y Sugiyama et al.
MOLECULAR GENETICS AND GENOMICS (2005)
A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
E Kotera et al.
NATURE (2005)
The plant mitochondrial proteome
AH Millar et al.
TRENDS IN PLANT SCIENCE (2005)
Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome
Y Ogihara et al.
NUCLEIC ACIDS RESEARCH (2005)
Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.)
T Komori et al.
PLANT JOURNAL (2004)
High levels of RNA editing in a vascular plant chloroplast genome:: analysis of transcripts from the fern Adiantum capillus-veneris
PG Wolf et al.
GENE (2004)
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
C Lurin et al.
PLANT CELL (2004)
The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.):: comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana
H Handa
NUCLEIC ACIDS RESEARCH (2003)
The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats
GG Brown et al.
PLANT JOURNAL (2003)
A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice
T Kazama et al.
FEBS LETTERS (2003)
Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family
S Desloire et al.
EMBO REPORTS (2003)
RNA editing in hornwort chloroplasts makes more than half the genes functional
M Kugita et al.
NUCLEIC ACIDS RESEARCH (2003)
Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish
N Koizuka et al.
PLANT JOURNAL (2003)
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
JE Bowers et al.
NATURE (2003)
Gene expression in plant mitochondria: transcriptional and post-transcriptional control
S Binder et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
BIOINFORMATICS (2003)
A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis
M Hashimoto et al.
PLANT JOURNAL (2003)
The complete sequence of the rice (Oryza sativa L.) mitochondrial genome:: frequent DNA sequence acquisition and loss during the evolution of flowering plants
Y Notsu et al.
MOLECULAR GENETICS AND GENOMICS (2002)
A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants
S Bentolila et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
The role of UV-B radiation in aquatic and terrestrial ecosystems -: an experimental and functional analysis of the evolution of UV-absorbing compounds
J Rozema et al.
JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY (2002)
The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNACys(GCA)
T Kubo et al.
NUCLEIC ACIDS RESEARCH (2000)
In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants
S Aubourg et al.
PLANT MOLECULAR BIOLOGY (2000)
The PPR motif - a TPR-related motif prevalent in plant organellar proteins
ID Small et al.
TRENDS IN BIOCHEMICAL SCIENCES (2000)