4.5 Article

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide

Rashi Halder et al.

MOLECULAR BIOSYSTEMS (2010)

Review Genetics & Heredity

Evaluating genome-scale approaches to eukaryotic DNA replication

David M. Gilbert

NATURE REVIEWS GENETICS (2010)

Review Cell Biology

Eukaryotic DNA replication origins: many choices for appropriate answers

Marcel Mechali

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

Kimberly R. Blahnik et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

John W. Nicol et al.

BIOINFORMATICS (2009)

Review Cell Biology

Replication timing and transcriptional control: beyond cause and effect-part II

Lchiro Hiratani et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals

Kangkan Halder et al.

MOLECULAR BIOSYSTEMS (2009)

Article Biochemistry & Molecular Biology

Selection for the G4 DNA Motif at the 5′ End of Human Genes

Johanna Eddy et al.

MOLECULAR CARCINOGENESIS (2009)

Article Genetics & Heredity

Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells

Joana Sequeira-Mendes et al.

PLOS GENETICS (2009)

Article Biochemistry & Molecular Biology

A revisionist replicon model for higher eukaryotic genomes

J. L. Hamlin et al.

JOURNAL OF CELLULAR BIOCHEMISTRY (2008)

Article Multidisciplinary Sciences

Replication timing, chromosomal bands, and isochores

Maria Costantini et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Genome-wide studies highlight indirect links between human replication origins and gene regulation

Jean-Charles Cadoret et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

Ichiro Hiratani et al.

PLOS BIOLOGY (2008)

Article Multidisciplinary Sciences

Induced pluripotent stem cell lines derived from human somatic cells

Junying Yu et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

High-throughput mapping of origins of replication in human cells

Isabelle Lucas et al.

EMBO REPORTS (2007)

Review Genetics & Heredity

Replication in context: dynamic regulation of DNA replication patterns in metazoans

Mirit I. Aladjem

NATURE REVIEWS GENETICS (2007)

Article Biochemistry & Molecular Biology

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

Neerja Karnani et al.

GENOME RESEARCH (2007)

Article Biochemical Research Methods

Feeder-independent culture of human embryonic stem cells

Tenneille E. Ludwig et al.

NATURE METHODS (2006)

Article Biochemistry & Molecular Biology

Mitotic remodeling of the replicon and chromosome structure

JM Lemaitre et al.

Article Multidisciplinary Sciences

Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins

M Touchon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Prevalence of quadruplexes in the human genome

JL Huppert et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding

D Remus et al.

EMBO JOURNAL (2004)

Article Biochemistry & Molecular Biology

Replication timing of the human genome

K Woodfine et al.

HUMAN MOLECULAR GENETICS (2004)

Article Multidisciplinary Sciences

DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states

EJ White et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Cell Biology

Coordination of replication and transcription along a Drosophila chromosome

DM MacAlpine et al.

GENES & DEVELOPMENT (2004)

Review Biochemistry & Molecular Biology

Genomic specification and epigenetic regulation of eukaryotic DNA replication origins

F Antequera

EMBO JOURNAL (2004)

Article Genetics & Heredity

Representing GC variation along eukaryotic chromosomes

J Paces et al.