Related references
Note: Only part of the references are listed.Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis
M. McGrath et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
Putative Compensatory Mutations in the rpoC Gene of Rifampin-Resistant Mycobacterium tuberculosis Are Associated with Ongoing Transmission
M. de Vos et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)
Microbial Persistence and the Road to Drug Resistance
Nadia R Cohen et al.
CELL HOST & MICROBE (2013)
The re-emergence of tuberculosis: what have we learnt from molecular epidemiology?
M. W. d Borgdorff et al.
CLINICAL MICROBIOLOGY AND INFECTION (2013)
The evolutionary pressures that have molded Mycobacterium tuberculosis into an infectious adjuvant
David G. Russell
CURRENT OPINION IN MICROBIOLOGY (2013)
Totally drug-resistant tuberculosis (TDR-TB) in India: every dark cloud has a silver lining
Zarir Udwadia et al.
JOURNAL OF EPIDEMIOLOGY AND COMMUNITY HEALTH (2013)
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
Timothy M. Walker et al.
LANCET INFECTIOUS DISEASES (2013)
The Mycobacterium tuberculosis regulatory network and hypoxia
James E. Galagan et al.
NATURE (2013)
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Inaki Comas et al.
NATURE GENETICS (2013)
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Philip Supply et al.
NATURE GENETICS (2013)
Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
Christopher B. Ford et al.
NATURE GENETICS (2013)
Dynamic Persistence of Antibiotic-Stressed Mycobacteria
Yuichi Wakamoto et al.
SCIENCE (2013)
Functional Roles of Pulsing in Genetic Circuits
Joe H. Levine et al.
SCIENCE (2013)
The heterogeneous evolution of multidrug-resistant Mycobacterium tuberculosis
Borna Mueller et al.
TRENDS IN GENETICS (2013)
The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations
Caitlin S. Pepperell et al.
PLOS PATHOGENS (2013)
Reducing assembly complexity of microbial genomes with single-molecule sequencing
Sergey Koren et al.
GENOME BIOLOGY (2013)
Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study
Josephine M. Bryant et al.
LANCET RESPIRATORY MEDICINE (2013)
Mycobacterial Lineages Causing Pulmonary and Extrapulmonary Tuberculosis, Ethiopia
Rebuma Firdessa et al.
EMERGING INFECTIOUS DISEASES (2013)
Novel Mycobacterium tuberculosis Complex Isolate from a Wild Chimpanzee
Mireia Coscolla et al.
EMERGING INFECTIOUS DISEASES (2013)
Rib lesions in skeletons from early neolithic sites in Central Germany: On the trail of tuberculosis at the onset of agriculture
Nicole Nicklisch et al.
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (2012)
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
Michael A. Quail et al.
BMC GENOMICS (2012)
Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains
Franck Biet et al.
BMC MICROBIOLOGY (2012)
After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
Amine Namouchi et al.
GENOME RESEARCH (2012)
Microevolution of extensively drug-resistant tuberculosis in Russia
Nicola Casali et al.
GENOME RESEARCH (2012)
DNA fingerprinting of Mycobacterium tuberculosis: From phage typing to whole-genome sequencing
Anita C. Schuerch et al.
INFECTION GENETICS AND EVOLUTION (2012)
The Surprising Diversity of Mycobacterium tuberculosis: Change You Can Believe In
Sarah M. Fortune
JOURNAL OF INFECTIOUS DISEASES (2012)
Dynamic Population Changes in Mycobacterium tuberculosis During Acquisition and Fixation of Drug Resistance in Patients
Gang Sun et al.
JOURNAL OF INFECTIOUS DISEASES (2012)
A hybrid approach for the automated finishing of bacterial genomes
Ali Bashir et al.
NATURE BIOTECHNOLOGY (2012)
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
Inaki Comas et al.
NATURE GENETICS (2012)
Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region
Brian Weiner et al.
PLOS ONE (2012)
Host-pathogen coevolution in human tuberculosis
Sebastien Gagneux
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Genotype of a historic strain of Mycobacterium tuberculosis
Abigail S. Bouwman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Tuberculosis and HIV Co-Infection
Andrzej Pawlowski et al.
PLOS PATHOGENS (2012)
Impulse Control: Temporal Dynamics in Gene Transcription
Nir Yosef et al.
CELL (2011)
Clinical characteristics of the smooth tubercle bacilli 'Mycobacterium canettii' infection suggest the existence of an environmental reservoir
J. -L. Koeck et al.
CLINICAL MICROBIOLOGY AND INFECTION (2011)
Mycobacterium tuberculosis and the intimate discourse of a chronic infection
David G. Russell
IMMUNOLOGICAL REVIEWS (2011)
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
Christopher B. Ford et al.
NATURE GENETICS (2011)
Characterization of the KstR-dependent promoter of the gene for the first step of the cholesterol degradative pathway in Mycobacterium smegmatis
Iria Uhia et al.
MICROBIOLOGY-SGM (2011)
Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
Jennifer L. Gardy et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Phylogeny of Mycobacterium tuberculosis Beijing Strains Constructed from Polymorphisms in Genes Involved in DNA Replication, Recombination and Repair
Olga Mestre et al.
PLOS ONE (2011)
Dynamics of Antibiotic Resistant Mycobacterium tuberculosis during Long-Term Infection and Antibiotic Treatment
Solomon H. Mariam et al.
PLOS ONE (2011)
The rise and fall of the Mycobacterium tuberculosis genome
Frederic J. Veyrier et al.
TRENDS IN MICROBIOLOGY (2011)
A role for systems epidemiology in tuberculosis research
Inaki Comas et al.
TRENDS IN MICROBIOLOGY (2011)
Mycobacterium tuberculosis Uses Host Triacylglycerol to Accumulate Lipid Droplets and Acquires a Dormancy-Like Phenotype in Lipid-Loaded Macrophages
Jaiyanth Daniel et al.
PLOS PATHOGENS (2011)
The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa
Thomas R. Ioerger et al.
BMC GENOMICS (2010)
Mycobacterium tuberculosis Wears What It Eats
David G. Russell et al.
CELL HOST & MICROBE (2010)
A Thiolase of Mycobacterium tuberculosis Is Required for Virulence and Production of Androstenedione and Androstadienedione from Cholesterol
Natasha M. Nesbitt et al.
INFECTION AND IMMUNITY (2010)
Molecular characteristics of Mycobacterium canettii the smooth Mycobacterium tuberculosis bacilli
Michel Fabre et al.
INFECTION GENETICS AND EVOLUTION (2010)
Tuberculosis on the north coast of Peru: skeletal and molecular paleopathology of late pre-Hispanic and postcontact mycobacterial disease
Haagen D. Klaus et al.
JOURNAL OF ARCHAEOLOGICAL SCIENCE (2010)
Massive Gene Duplication Event among Clinical Isolates of the Mycobacterium tuberculosis W/Beijing Family
Pilar Domenech et al.
JOURNAL OF BACTERIOLOGY (2010)
Sublethal Antibiotic Treatment Leads to Multidrug Resistance via Radical-Induced Mutagenesis
Michael A. Kohanski et al.
MOLECULAR CELL (2010)
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
Inaki Comas et al.
NATURE GENETICS (2010)
Cholesterol utilization in mycobacteria is controlled by two TetR-type transcriptional regulators: kstR and kstR2
Sharon L. Kendall et al.
MICROBIOLOGY-SGM (2010)
Novel Mycobacterium tuberculosis Complex Pathogen, M. mungi
Kathleen A. Alexander et al.
EMERGING INFECTIOUS DISEASES (2010)
Cholesterol Metabolism Increases the Metabolic Pool of Propionate in Mycobacterium tuberculosis
Xinxin Yang et al.
BIOCHEMISTRY (2009)
Emergence of New Forms of Totally Drug-Resistant Tuberculosis Bacilli Super Extensively Drug-Resistant Tuberculosis or Totally Drug-Resistant Strains in Iran
Ali Akbar Velayati et al.
CHEST (2009)
Role of reactive oxygen species in antibiotic action and resistance
Daniel J. Dwyer et al.
CURRENT OPINION IN MICROBIOLOGY (2009)
Insertion and Deletion Events That Define the Pathogen Mycobacterium avium subsp paratuberculosis
David C. Alexander et al.
JOURNAL OF BACTERIOLOGY (2009)
Triacylglycerol Utilization Is Required for Regrowth of In Vitro Hypoxic Nonreplicating Mycobacterium bovis Bacillus Calmette-Guerin
Kai Leng Low et al.
JOURNAL OF BACTERIOLOGY (2009)
Tuberculosis and diabetes mellitus: convergence of two epidemics
Kelly E. Dooley et al.
LANCET INFECTIOUS DISEASES (2009)
Foamy macrophages and the progression of the human tuberculosis granuloma
David G. Russell et al.
NATURE IMMUNOLOGY (2009)
A replication clock for Mycobacterium tuberculosis
Wendy P. Gill et al.
NATURE MEDICINE (2009)
Insights from genomic profiling of transcription factors
Peggy J. Farnham
NATURE REVIEWS GENETICS (2009)
Microfluidic devices for measuring gene network dynamics in single cells
Matthew R. Bennett et al.
NATURE REVIEWS GENETICS (2009)
Bacterial gene amplification: implications for the evolution of antibiotic resistance
Linus Sandegren et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Genome Analysis of Multi- and Extensively-Drug-Resistant Tuberculosis from KwaZulu-Natal, South Africa
Thomas R. Ioerger et al.
PLOS ONE (2009)
Mycobacterium tuberculosis WhiB3 Maintains Redox Homeostasis by Regulating Virulence Lipid Anabolism to Modulate Macrophage Response
Amit Singh et al.
PLOS PATHOGENS (2009)
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
Iain MacCallum et al.
GENOME BIOLOGY (2009)
Consensus generation and variant detection by Celera Assembler
Gennady Denisov et al.
BIOINFORMATICS (2008)
Protein networks in disease
Trey Ideker et al.
GENOME RESEARCH (2008)
ALLPATHS: De novo assembly of whole-genome shotgun microreads
Jonathan Butler et al.
GENOME RESEARCH (2008)
Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis
Timothy P. Stinear et al.
GENOME RESEARCH (2008)
IS6110, a Mycobacterium tuberculosis complex-specific insertion sequence, is also present in the genome of Mycobacterium smegmatis, suggestive of lateral gene transfer among mycobacterial species
Abbie Coros et al.
JOURNAL OF BACTERIOLOGY (2008)
Mycobacterium avium subsp paratuberculosis and M-avium subsp avium are independently evolved pathogenic clones of a much broader group of M-avium organisms
Christine Y. Turenne et al.
JOURNAL OF BACTERIOLOGY (2008)
Current Mycobacterium: what's on tomorrow's menu?
Marcel A. Behr
MICROBES AND INFECTION (2008)
Multispacer Sequence Typing for Mycobacterium tuberculosis Genotyping
Zoheira Djelouadji et al.
PLOS ONE (2008)
Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a Neolithic Settlement in the Eastern Mediterranean
Israel Hershkovitz et al.
PLOS ONE (2008)
CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA
Luciano A. Marraffini et al.
SCIENCE (2008)
Horizontally acquired genomic islands in the tubercle bacilli
Jichan Jang et al.
TRENDS IN MICROBIOLOGY (2008)
High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography
Ruth Hershberg et al.
PLOS BIOLOGY (2008)
Dynamics of Genome Rearrangement in Bacterial Populations
Aaron E. Darling et al.
PLOS GENETICS (2008)
Foamy Macrophages from Tuberculous Patients' Granulomas Constitute a Nutrient-Rich Reservoir for M-tuberculosis Persistence
Pascale Peyron et al.
PLOS PATHOGENS (2008)
Origin, spread and demography of the Mycobacterium tuberculosis complex
Thierry Wirth et al.
PLOS PATHOGENS (2008)
Mycobacterium tuberculosis and the environment within the phagosome
Kyle Rohde et al.
IMMUNOLOGICAL REVIEWS (2007)
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
Tarjei S. Mikkelsen et al.
NATURE (2007)
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
Gordon Robertson et al.
NATURE METHODS (2007)
Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli
Jennifer Becq et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
A highly conserved transcriptional repressor controls a large regulon involved in lipid degradation in Mycobacterium smegmatis and Mycobacterium tuberculosis
Sharon L. Kendall et al.
MOLECULAR MICROBIOLOGY (2007)
Mycobacterium tuberculosis WhiB3 responds to O2 and nitric oxide via its [4Fe-4S] cluster and is essential for nutrient starvation survival
Amit Singh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Molecular history of tuberculosis from ancient mummies and skeletons
A. R. Zink et al.
INTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY (2007)
Genome-wide mapping of in vivo protein-DNA interactions
David S. Johnson et al.
SCIENCE (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development
Sebastien Gagneux et al.
LANCET INFECTIOUS DISEASES (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
Mycobacterium avium in the postgenomic era
Christine Y. Turenne et al.
CLINICAL MICROBIOLOGY REVIEWS (2007)
Who puts the tubercle in tuberculosis?
David G. Russell
NATURE REVIEWS MICROBIOLOGY (2007)
Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis
Philip Supply et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2006)
Hyperdisease in the late Pleistocene: validation of an early 20th century hypothesis
Bruce M. Rothschild et al.
NATURWISSENSCHAFTEN (2006)
Did ice-age bovids spread tuberculosis?
Bruce M. Rothschild et al.
NATURWISSENSCHAFTEN (2006)
Molecular epidemiology of tuberculosis: Current insights
Barun Mathema et al.
CLINICAL MICROBIOLOGY REVIEWS (2006)
The competitive cost of antibiotic resistance in Mycobacterium tuberculosis
Sebastien Gagneux et al.
SCIENCE (2006)
Mycobacterium tuberculosis complex genetic diversity:: mining the fourth international spoligotyping database (SpoIDB4) for classification, population genetics and epidemiology
Karine Brudey et al.
BMC MICROBIOLOGY (2006)
Variable host-pathogen compatibility in Mycobacterium tuberculosis
S Gagneux et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Induction and inhibition of ciprofloxacin resistance-conferring mutations in hypermutator bacteria
RT Cirz et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2006)
Characterization of Mycobacterium caprae isolates from Europe by mycobacterial interspersed repetitive unit genotyping
WM Prodinger et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis
M. Cristina Gutierrez et al.
PLOS PATHOGENS (2005)
Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains
A Gori et al.
MOLECULAR AND CELLULAR PROBES (2005)
Drug-resistant, tuberculosis, clinical virulence, and the dominance of the Beijing strain family in Russia
F Drobniewski et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2005)
The origin and evolution of Mycobacterium tuberculosis
S Mostowy et al.
CLINICS IN CHEST MEDICINE (2005)
Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence
EJ Muñoz-Elías et al.
NATURE MEDICINE (2005)
Replication dynamics of Mycobacterium tuberculosis in chronically infected mice?
EJ Munoz-Elias et al.
INFECTION AND IMMUNITY (2005)
Stable association between strains of Mycobacterium tuberculosis and their human host populations
AE Hirsh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Functional and evolutionary genomics of Mycobacterium tuberculosis:: Insights from genomic deletions in 100 strains
AG Tsolaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
IS6110-mediated deletion polymorphism in isogenic strains of Mycobacterium tuberculosis
SL Sampson et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Tuberculosis: from prehistory to Robert Koch, as revealed by ancient DNA
HD Donoghue et al.
LANCET INFECTIOUS DISEASES (2004)
Fatty acid biosynthesis in Mycobacterium tuberculosis:: Lateral gene transfer, adaptive evolution, and gene duplication
RJ Kinsella et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Transcriptional adaptation of Mycobacterium tuberculosis within macrophages:: Insights into the phagosomal environment
D Schnappinger et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2003)
Tuberculosis in seals caused by a novel member of the Mycobacterium tuberculosis complex:: Mycobacterium pinnipedii sp nov
DV Cousins et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)
The complete genome sequence of Mycobacterium bovis
T Garnier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
IS6110-mediated deletion polymorphism in the direct repeat region of clinical isolates of Mycobacterium tuberculosis
SL Sampson et al.
JOURNAL OF BACTERIOLOGY (2003)
DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis
HIM Boshoff et al.
CELL (2003)
Molecular study on human tuberculosis in three geographically distinct and time delineated populations from ancient Egypt
AR Zink et al.
EPIDEMIOLOGY AND INFECTION (2003)
Tuberculosis drug resistance: A global threat
JB Nachega et al.
CLINICAL INFECTIOUS DISEASES (2003)
Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area
P Supply et al.
MOLECULAR MICROBIOLOGY (2003)
Characterization of Mycobacterium tuberculosis complex DNAs from Egyptian mummies by spoligotyping
AR Zink et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
Effect of katG mutations on the virulence of Mycobacterium tuberculosis and the implication for transmission in humans
AS Pym et al.
INFECTION AND IMMUNITY (2002)
Mycobacterium and the coat of many lipids
DG Russell et al.
JOURNAL OF CELL BIOLOGY (2002)
Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis complex
S Mostowy et al.
JOURNAL OF INFECTIOUS DISEASES (2002)
Fitness cost of chromosomal drug resistance-conferring mutations
P Sander et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2002)
Topological and causal structure of the yeast transcriptional regulatory network
N Guelzim et al.
NATURE GENETICS (2002)
A new evolutionary scenario for the Mycobacterium tuberculosis complex
R Brosch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
How can immunology contribute to the control of tuberculosis?
SHE Kaufmann
NATURE REVIEWS IMMUNOLOGY (2001)
Mycobacterium tuberculosis:: Here today, and here tomorrow
DG Russell
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2001)
Molecular analysis of skeletal tuberculosis in an ancient Egyptian population
A Zink et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2001)
Comparison of fitness of two isolates of Mycobacterium tuberculosis, one of which had developed multi-drug resistance during the course of treatment
AP Davies et al.
JOURNAL OF INFECTION (2000)
Lateral gene transfer and the nature of bacterial innovation
H Ochman et al.
NATURE (2000)