4.7 Review

Determinants and dynamics of genome accessibility

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Chromatin signatures of the Drosophila replication program

Matthew L. Eaton et al.

GENOME RESEARCH (2011)

Article Multidisciplinary Sciences

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila

Erica Larschan et al.

NATURE (2011)

Article Multidisciplinary Sciences

Determinants of nucleosome organization in primary human cells

Anton Valouev et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction

Beat Fierz et al.

NATURE CHEMICAL BIOLOGY (2011)

Article Genetics & Heredity

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

Sam John et al.

NATURE GENETICS (2011)

Review Genetics & Heredity

Silencing chromatin: comparing modes and mechanisms

Christian Beisel et al.

NATURE REVIEWS GENETICS (2011)

Article Multidisciplinary Sciences

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

Zhenhai Zhang et al.

SCIENCE (2011)

Article Biochemistry & Molecular Biology

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

Guillaume J. Filion et al.

Article Cell Biology

Conserved nucleosome positioning defines replication origins

Matthew L. Eaton et al.

GENES & DEVELOPMENT (2010)

Article Biochemistry & Molecular Biology

Ring1B Compacts Chromatin Structure and Represses Gene Expression Independent of Histone Ubiquitination

Ragnhild Eskeland et al.

MOLECULAR CELL (2010)

Article Multidisciplinary Sciences

Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET

Toshiyuki Matsui et al.

NATURE (2010)

Review Genetics & Heredity

Evaluating genome-scale approaches to eukaryotic DNA replication

David M. Gilbert

NATURE REVIEWS GENETICS (2010)

Review Cell Biology

Eukaryotic DNA replication origins: many choices for appropriate answers

Marcel Mechali

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Review Cell Biology

Histone variants - ancient wrap artists of the epigenome

Paul B. Talbert et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing

Oliver Bell et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Multidisciplinary Sciences

INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway

Yingjun Jiang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biochemistry & Molecular Biology

The Biology of Chromatin Remodeling Complexes

Cedric R. Clapier et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2009)

Article Biochemistry & Molecular Biology

Mechanisms that Specify Promoter Nucleosome Location and Identity

Paul D. Hartley et al.

Article Cell Biology

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

Michaela Schwaiger et al.

GENES & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Modulation of Nucleotide Excision Repair by Mammalian SWI/SNF Chromatin-remodeling Complex

Qun Zhao et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Review Biotechnology & Applied Microbiology

Altering the chromatin landscape for nucleotide excision repair

Ronita Nag et al.

MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH (2009)

Article Multidisciplinary Sciences

The DNA-encoded nucleosome organization of a eukaryotic genome

Noam Kaplan et al.

NATURE (2009)

Article Multidisciplinary Sciences

An oestrogen-receptor-α-bound human chromatin interactome

Melissa J. Fullwood et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

Yong Zhang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Review Genetics & Heredity

What controls nucleosome positions?

Eran Segal et al.

TRENDS IN GENETICS (2009)

Article Biochemistry & Molecular Biology

Dynamic regulation of nucleosome positioning in the human genome

Dustin E. Schones et al.

Article Biochemistry & Molecular Biology

Structural Basis of UV DNA-Damage Recognition by the DDB1-DDB2 Complex

Andrea Scrima et al.

Article Biochemistry & Molecular Biology

High-resolution mapping and characterization of open chromatin across the genome

Alan P. Boyle et al.

Article Biochemistry & Molecular Biology

A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations

Vijay K. Tiwari et al.

GENOME RESEARCH (2008)

Article Multidisciplinary Sciences

Chromatin decouples promoter threshold from dynamic range

Felix H. Lam et al.

NATURE (2008)

Article Multidisciplinary Sciences

Nucleosome organization in the Drosophila genome

Travis N. Mavrich et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure

Xu Lu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Genome-wide studies highlight indirect links between human replication origins and gene regulation

Jean-Charles Cadoret et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

Ichiro Hiratani et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes

Timothy J. Parnell et al.

EMBO JOURNAL (2008)

Article Multidisciplinary Sciences

Chromatin remodelling at promoters suppresses antisense transcription

Iestyn Whitehouse et al.

NATURE (2007)

Review Biochemistry & Molecular Biology

How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers

Sean D. Taverna et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Article Multidisciplinary Sciences

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Tarjei S. Mikkelsen et al.

NATURE (2007)

Article Multidisciplinary Sciences

Histone replacement marks the boundaries of cis-regulatory domains

Yoshiko Mito et al.

SCIENCE (2007)

Review Biochemistry & Molecular Biology

Chromatin modifications and their function

Tony Kouzarides

Review Biochemistry & Molecular Biology

The role of chromatin during transcription

Bing Li et al.

Review Cell Biology

Global patterns of histone modifications

Oliver J. Rando

CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)

Article Biochemistry & Molecular Biology

Rad4-Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair

Feng Gong et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Multidisciplinary Sciences

A genomic code for nucleosome positioning

Eran Segal et al.

NATURE (2006)

Review Cell Biology

Nucleosome displacement in transcription

Jerry L. Workman

GENES & DEVELOPMENT (2006)

Article Biochemistry & Molecular Biology

Rapid accessibility of nucleosomal DNA in yeast on a second time scale

Andrea Bucceri et al.

EMBO JOURNAL (2006)

Article Biochemistry & Molecular Biology

Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II

Marc A. Schwabish et al.

MOLECULAR CELL (2006)

Review Cell Biology

A question of timing:: emerging links between transcription and replication

M Schwaiger et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2006)

Review Biochemistry & Molecular Biology

The contradictory definitions of heterochromatin: transcription and silencing

KL Huisinga et al.

CHROMOSOMA (2006)

Article Biochemistry & Molecular Biology

Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters

WJ Jessen et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Multidisciplinary Sciences

Histone H4-K16 acetylation controls chromatin structure and protein interactions

M Shogren-Knaak et al.

SCIENCE (2006)

Review Cell Biology

The histone code at DNA breaks: A guide to repair?

H van Attikum et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)

Article Multidisciplinary Sciences

Genome-scale identification of nucleosome positions in S-cerevisiae

GC Yuan et al.

SCIENCE (2005)

Article Biochemistry & Molecular Biology

UV-induced ubiquitylation of XPC protein mediated by UV-DDB-ubiquitin ligase complex

K Sugasawa et al.

Article Biochemistry & Molecular Biology

Rapid spontaneous accessibility of nucleosomal DNA

G Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)

Article Multidisciplinary Sciences

Genome-wide identification of DNasel hypersensitive sites using active chromatin sequence libraries

PJ Sabo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Histone H3.3 is enriched in covalent modifications associated with active chromatin

E McKittrick et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

GE Crawford et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Cell Biology

In search of the holy replicator

DM Gilbert

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)

Article Genetics & Heredity

Evidence for nucleosome depletion at active regulatory regions genome-wide

CK Lee et al.

NATURE GENETICS (2004)

Article Multidisciplinary Sciences

Chromatin compaction by a polycomb group protein complex

NJ Francis et al.

SCIENCE (2004)

Article Multidisciplinary Sciences

FACT facilitates transcription-dependent nucleosome alteration

R Belotserkovskaya et al.

SCIENCE (2003)

Article Multidisciplinary Sciences

Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

PL Nagy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Chromatin fiber folding: Requirement for the histone H4N-terminal tail

B Dorigo et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Multidisciplinary Sciences

Controlling the double helix

G Felsenfeld et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

Looping and interaction between hypersensitive sites in the active β-globin locus

B Tolhuis et al.

MOLECULAR CELL (2002)

Article Multidisciplinary Sciences

Role of histone H3 lysine 27 methylation in polycomb-group silencing

R Cao et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Histone methyltransferase activity of a Drosophila polycomb group repressor complex

J Müller et al.

Article Multidisciplinary Sciences

Capturing chromosome conformation

J Dekker et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Nucleosome sliding via TBP DNA binding in vivo

S Lomvardas et al.

Article Multidisciplinary Sciences

Rb targets histone H3 methylation and HP1 to promoters

SJ Nielsen et al.

NATURE (2001)

Article Multidisciplinary Sciences

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

AJ Bannister et al.

NATURE (2001)

Article Multidisciplinary Sciences

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

M Lachner et al.

NATURE (2001)