Related references
Note: Only part of the references are listed.Non-Stationary 13C-Metabolic Flux Ratio Analysis
Manuel Hoerl et al.
BIOTECHNOLOGY AND BIOENGINEERING (2013)
Isotopically non-stationary metabolic flux analysis: complex yet highly informative
Wolfgang Wiechert et al.
CURRENT OPINION IN BIOTECHNOLOGY (2013)
Systems-integration of plant metabolism: means, motive and opportunity
Mark Stitt
CURRENT OPINION IN PLANT BIOLOGY (2013)
Metabolic Fluxes in an Illuminated Arabidopsis Rosette
Marek Szecowka et al.
PLANT CELL (2013)
Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis
Nadine Toepfer et al.
PLANT CELL (2013)
Analysis of metabolic flux using dynamic labelling and metabolic modelling
A. R. Fernie et al.
PLANT CELL AND ENVIRONMENT (2013)
Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant
Sunil Kumar Pal et al.
PLANT PHYSIOLOGY (2013)
Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions1[W][OA]
Ronan Sulpice et al.
PLANT PHYSIOLOGY (2013)
Collisional fragmentation of central carbon metabolites in LC-MS/MS increases precision of 13C metabolic flux analysis
Martin Ruehl et al.
BIOTECHNOLOGY AND BIOENGINEERING (2012)
Insights into metabolic efficiency from flux analysis
Xuewen Chen et al.
JOURNAL OF EXPERIMENTAL BOTANY (2012)
Meta-analysis of untargeted metabolomic data from multiple profiling experiments
Gary J. Patti et al.
NATURE PROTOCOLS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
High-resolution plant metabolomics: from mass spectral features to metabolites and from whole-cell analysis to subcellular metabolite distributions
Stephan Kueger et al.
PLANT JOURNAL (2012)
On the Discordance of Metabolomics with Proteomics and Transcriptomics: Coping with Increasing Complexity in Logic, Chemistry, and Network Interactions
Alisdair R. Fernie et al.
PLANT PHYSIOLOGY (2012)
Grand challenges in plant systems biology: closing the circle(s)
Alisdair R. Fernie
FRONTIERS IN PLANT SCIENCE (2012)
Integration of expression data in genome-scale metabolic network reconstructions
Anna S. Blazier et al.
FRONTIERS IN PHYSIOLOGY (2012)
Functional integration of a metabolic network model and expression data without arbitrary thresholding
Paul A. Jensen et al.
BIOINFORMATICS (2011)
Stationary versus non-stationary 13C-MFA: A comparison using a consistent dataset
Stephan Noack et al.
JOURNAL OF BIOTECHNOLOGY (2011)
Metabolite extraction from suspension-cultured mammalian cells for global metabolite profiling
Christopher A. Sellick et al.
NATURE PROTOCOLS (2011)
Global urinary metabolic profiling procedures using gas chromatography-mass spectrometry
Eric Chun Yong Chan et al.
NATURE PROTOCOLS (2011)
Central metabolic fluxes in the endosperm of developing maize seeds and their implications for metabolic engineering
Ana P. Alonso et al.
METABOLIC ENGINEERING (2011)
Identification of Genes in the Phenylalanine Metabolic Pathway by Ectopic Expression of a MYB Transcription Factor in Tomato Fruit
Valeriano Dal Cin et al.
PLANT CELL (2011)
Recommendations for Reporting Metabolite Data
Alisdair R. Fernie et al.
PLANT CELL (2011)
Analysis of the compartmentalized metabolome - a validation of the non-aqueous fractionation technique
Sebastian Klie et al.
FRONTIERS IN PLANT SCIENCE (2011)
From models to crop species: caveats and solutions for translational metabolomics
Takayuki Tohge et al.
FRONTIERS IN PLANT SCIENCE (2011)
Metabolic turnover analysis by a combination of in vivo 13C-labelling from 13CO2 and metabolic profiling with CE-MS/MS reveals rate-limiting steps of the C3 photosynthetic pathway in Nicotiana tabacum leaves
Tomohisa Hasunuma et al.
JOURNAL OF EXPERIMENTAL BOTANY (2010)
NMR-based metabolomic analysis of plants
Hye Kyong Kim et al.
NATURE PROTOCOLS (2010)
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function
Takayuki Tohge et al.
NATURE PROTOCOLS (2010)
Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria
Wagner L. Araujo et al.
PLANT CELL (2010)
Subcellular Flux Analysis of Central Metabolism in a Heterotrophic Arabidopsis Cell Suspension Using Steady-State Stable Isotope Labeling
Shyam K. Masakapalli et al.
PLANT PHYSIOLOGY (2010)
AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development
Fumio Matsuda et al.
PLANT PHYSIOLOGY (2010)
A Genome-Scale Metabolic Model Accurately Predicts Fluxes in Central Carbon Metabolism under Stress Conditions
Thomas C. R. Williams et al.
PLANT PHYSIOLOGY (2010)
MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing
Arjen Lommen
ANALYTICAL CHEMISTRY (2009)
Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression
Arun Sreekumar et al.
NATURE (2009)
Web-based resources for mass-spectrometry-based metabolomics: A user's guide
Takayuki Tohge et al.
PHYTOCHEMISTRY (2009)
The role of light in soybean seed filling metabolism
Doug K. Allen et al.
PLANT JOURNAL (2009)
Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations
Stephanie Arrivault et al.
PLANT JOURNAL (2009)
A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties
Mark G. Poolman et al.
PLANT PHYSIOLOGY (2009)
Starch as a major integrator in the regulation of plant growth
Ronan Sulpice et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments
Alexander Luedemann et al.
BIOINFORMATICS (2008)
Promoting coherent minimum reporting guidelines for biological and biomedical investigations:: the MIBBI project
Chris F. Taylor et al.
NATURE BIOTECHNOLOGY (2008)
H-1 NMR metabolite fingerprinting and metabolomic analysis of perchloric acid extracts from plant tissues
Nicholas J. Kruger et al.
NATURE PROTOCOLS (2008)
Kinetic flux profiling for quantitation of cellular metabolic fluxes
Jie Yuan et al.
NATURE PROTOCOLS (2008)
Quality control for plant metabolomics: reporting MSI-compliant studies
Oliver Fiehn et al.
PLANT JOURNAL (2008)
Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos
Ana P. Alonso et al.
PLANT JOURNAL (2007)
The metabolomics standards initiative (MSI)
Oliver Fiehn et al.
METABOLOMICS (2007)
Proposed minimum reporting standards for chemical analysis
Lloyd W. Sumner et al.
METABOLOMICS (2007)
A transient isotopic labeling methodology for 13C metabolic flux analysis of photo auto trophic microorganisms
Avantika A. Shastri et al.
PHYTOCHEMISTRY (2007)
Network flux analysis:: Impact of 13C-substrates on metabolism in Arabidopsis thaliana cell suspension cultures
Nicholas J. Kruger et al.
PHYTOCHEMISTRY (2007)
Metabolic flux analysis in a nonstationary system:: Fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
Maciek R. Antoniewicz et al.
METABOLIC ENGINEERING (2007)
Metabolic flux analysis at ultra short time scale:: Isotopically non-stationary 13C labeling experiments
Katharina Noeh et al.
JOURNAL OF BIOTECHNOLOGY (2007)
Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions
Maciek R. Antoniewicz et al.
METABOLIC ENGINEERING (2007)
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
Ric C. H. De Vos et al.
NATURE PROTOCOLS (2007)
Mitochondrial metabolism in developing embryos of Brassica napus
Jorg Schwender et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Kinetic flux profiling of nitrogen assimilation in Escherichia coli
Jie Yuan et al.
NATURE CHEMICAL BIOLOGY (2006)
Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana
JE Lunn et al.
BIOCHEMICAL JOURNAL (2006)
Experimental design principles for isotopically instationary 13C labeling experiments
Katharina Noeh et al.
BIOTECHNOLOGY AND BIOENGINEERING (2006)
Establishing reporting standards for metabolomic and metabonomic studies: A call for participation
Oliver Fiehn et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2006)
Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde
Denise Tieman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
XCMS: Processing mass spectrometry data for metabolite profiling using Nonlinear peak alignment, matching, and identification
CA Smith et al.
ANALYTICAL CHEMISTRY (2006)
Measuring multiple fluxes through plant metabolic networks
RG Ratcliffe et al.
PLANT JOURNAL (2006)
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
Shao-En Ong et al.
NATURE PROTOCOLS (2006)
Gas chromatography mass spectrometry-based metabolite profiling in plants
Jan Lisec et al.
NATURE PROTOCOLS (2006)
Flux an important, but neglected, component of functional glenomics
AR Fernie et al.
CURRENT OPINION IN PLANT BIOLOGY (2005)
Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in 13C labelled isotopes
U Roessner-Tunali et al.
PLANT JOURNAL (2004)
Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
J Schwender et al.
NATURE (2004)
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
MY Hirai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A proposed framework for the description of plant metabolomics experiments and their results
H Jenkins et al.
NATURE BIOTECHNOLOGY (2004)
Metabolic control analysis and regulation of the conversion of sucrose to starch in growing potato tubers
P Geigenberger et al.
PLANT CELL AND ENVIRONMENT (2004)
Quantification of compartmented metabolic fluxes in developing soybean embryos by employing Biosynthetic ally directed fractional 13C labeling, [13C, 1H] two-dimensional nuclear magnetic resonance, and comprehensive isotopomer balancing
G Sriram et al.
PLANT PHYSIOLOGY (2004)
Predictive metabolic engineering: A goal for systems biology
LJ Sweetlove et al.
PLANT PHYSIOLOGY (2003)
The metabolic architecture of plant cells - Stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells
D Rontein et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Carbocyclic fatty acids in plants:: Biochemical and molecular genetic characterization of cyclopropane fatty acid synthesis of Sterculia foetida
XM Bao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Growth stage-based phenotypic analysis of arabidopsis:: A model for high throughput functional genomics in plants
DC Boyes et al.
PLANT CELL (2001)
13C metabolic flux analysis
W Wiechert
METABOLIC ENGINEERING (2001)
The sucrose analog palatinose leads to a stimulation of sucrose degradation and starch synthesis when supplied to discs of growing potato tubers
AR Fernie et al.
PLANT PHYSIOLOGY (2001)
Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems
U Roessner et al.
PLANT CELL (2001)
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations
LM Raamsdonk et al.
NATURE BIOTECHNOLOGY (2001)
Metabolite profiling for plant functional genomics
O Fiehn et al.
NATURE BIOTECHNOLOGY (2000)
Strategies for metabolic flux analysis in plants using isotope labelling
A Roscher et al.
JOURNAL OF BIOTECHNOLOGY (2000)
Share Paper
