4.7 Article

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates

Related references

Note: Only part of the references are listed.
Review Biochemistry & Molecular Biology

Protein alpha-N-acetylation studied by N-terminomics

Petra Van Damme et al.

FEBS JOURNAL (2011)

Letter Biochemical Research Methods

TopFIND, a knowledgebase linking protein termini with function

Philipp F. Lange et al.

NATURE METHODS (2011)

Article Biochemical Research Methods

PepC: proteomics software for identifying differentially expressed proteins based on spectral counting

N. L. Heinecke et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

A Statistics-based Platform for Quantitative N-terminome Analysis and Identification of Protease Cleavage Products

Ulrich Auf Dem Keller et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Article Biochemical Research Methods

Multiplex N-terminome Analysis of MMP-2 and MMP-9 Substrate Degradomes by iTRAQ-TAILS Quantitative Proteomics

Anna Prudova et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Article Biotechnology & Applied Microbiology

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

Oded Kleifeld et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

Enzymatic route to preparative-scale synthesis of UDP-GlcNAc/GalNAc, their analogues and GDP-fucose

Guohui Zhao et al.

NATURE PROTOCOLS (2010)

Review Biochemistry & Molecular Biology

Updated Biological Roles for Matrix Metalloproteinases and New Intracellular Substrates Revealed by Degradomics

Georgina S. Butler et al.

BIOCHEMISTRY (2009)

Article Biochemical Research Methods

Temporal Profiling of the Adipocyte Proteome during Differentiation Using a Five-Plex SILAC Based Strategy

Henrik Molina et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

Paul J. Boersema et al.

NATURE PROTOCOLS (2009)

Review Biotechnology & Applied Microbiology

OPINION Proteomic identification of multitasking proteins in unexpected locations complicates drug targeting

Georgina S. Butler et al.

NATURE REVIEWS DRUG DISCOVERY (2009)

Article Biochemistry & Molecular Biology

Global mapping of the topography and magnitude of proteolytic events in apoptosis

Melissa M. Dix et al.

Article Biochemical Research Methods

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics

Hyungwon Choi et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

Brian C. Searle et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biotechnology & Applied Microbiology

Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites

Oliver Schilling et al.

NATURE BIOTECHNOLOGY (2008)

Letter Biochemical Research Methods

Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry

Michael L. Nielsen et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

Targeted analysis of protein termini

Wilma Dormeyer et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemistry & Molecular Biology

Profiling constitutive proteolytic events in vivo

John C. Timmer et al.

BIOCHEMICAL JOURNAL (2007)

Review Biochemistry & Molecular Biology

Proteomic discovery of protease substrates

Oliver Schilling et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2007)

Article Biochemical Research Methods

A predictive model for identifying proteins by a single peptide match

Roger Higdon et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Identification of proteolytic cleavage sites by quantitative proteomics

Mari Enoksson et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemical Research Methods

Proteome-wide identification of HtrA2/Omi substrates

Lieselotte Vande Walle et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Review Cell Biology

In search of partners: linking extracellular proteases to substrates

Christopher M. Overall et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Multidisciplinary Sciences

Proteolytic processing of SDF-1α reveals a change in receptor specificity mediating HIV-associated neurodegeneration

David Vergote et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Biochemistry & Molecular Biology

The surprising complexity of signal sequences

Ramanujan S. Hegde et al.

TRENDS IN BIOCHEMICAL SCIENCES (2006)

Article Biochemistry & Molecular Biology

Impact of the N-terminal amino acid on targeted protein degradation

Thierry Meinnel et al.

BIOLOGICAL CHEMISTRY (2006)

Article Biochemical Research Methods

In-gel digestion for mass spectrometric characterization of proteins and proteomes

Andrej Shevchenko et al.

NATURE PROTOCOLS (2006)

Article Biochemical Research Methods

A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)

Shao-En Ong et al.

NATURE PROTOCOLS (2006)

Article Biochemical Research Methods

Silver staining of proteins in polyacrylamide gels

Mireille Chevallet et al.

NATURE PROTOCOLS (2006)

Review Biotechnology & Applied Microbiology

Targeting proteases: successes, failures and future prospects

Boris Turk

NATURE REVIEWS DRUG DISCOVERY (2006)

Article Biochemical Research Methods

Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides

L McDonald et al.

NATURE METHODS (2005)

Article Biochemical Research Methods

Differential dimethyl labeling of N-termini of peptides after guanidination for proteome analysis

CJ Ji et al.

JOURNAL OF PROTEOME RESEARCH (2005)

Article Biochemical Research Methods

Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis

P Van Damme et al.

NATURE METHODS (2005)

Article Biochemistry & Molecular Biology

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

Andrew Keller et al.

MOLECULAR SYSTEMS BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Identification of formaldehyde-induced modifications in proteins - Reactions with model peptides

B Metz et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemical Research Methods

TANDEM: matching proteins with tandem mass spectra

R Craig et al.

BIOINFORMATICS (2004)

Article Chemistry, Analytical

Stable-isotope dimethyl labeling for quantitative proteomics

JL Hsu et al.

ANALYTICAL CHEMISTRY (2003)

Review Genetics & Heredity

Human and mouse proteases:: A comparative genomic approach

XS Puente et al.

NATURE REVIEWS GENETICS (2003)

Review Oncology

Strategies for MMP inhibition in cancer:: Innovations for the post-trial era

CM Overall et al.

NATURE REVIEWS CANCER (2002)

Review Cell Biology

Protease degradomics:: A new challenge for proteomics

C López-Otin et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2002)

Article Biochemical Research Methods

Minimizing resolution of isotopically coded peptides in comparative proteomics

RJ Zhang et al.

JOURNAL OF PROTEOME RESEARCH (2002)

Article Biochemical Research Methods

A proteomic approach for the identification of cell-surface proteins shed by metalloproteases

L Guo et al.

MOLECULAR & CELLULAR PROTEOMICS (2002)

Article Chemistry, Analytical

Overalkylation of a protein digest with iodoacetamide

ES Boja et al.

ANALYTICAL CHEMISTRY (2001)

Review Biochemistry & Molecular Biology

Nα-terminal acetylation of eukaryotic proteins

B Polevoda et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Multidisciplinary Sciences

Inflammation dampened by gelatinase A cleavage of monocyte chemoattractant protein-3

GA McQuibban et al.

SCIENCE (2000)