Related references
Note: Only part of the references are listed.UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
Daniel E. Newburger et al.
NUCLEIC ACIDS RESEARCH (2009)
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
Michael F. Berger et al.
CELL (2008)
Design of compact, universal DNA microarrays for protein binding microarray experiments
Anthony A. Philippakis et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2008)
Specific DNA-binding by Apicomplexan AP2 transcription factors
Erandi K. De Silva et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Functional specificity of a Hox protein mediated by the recognition of minor groove structure
Rohit Joshi et al.
CELL (2007)
Microarray analyses of newborn mouse ovaries lacking Nobox
Youngsok Choi et al.
BIOLOGY OF REPRODUCTION (2007)
RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors
Xiaoyu Chen et al.
BIOINFORMATICS (2007)
Genome-wide mapping of in vivo protein-DNA interactions
David S. Johnson et al.
SCIENCE (2007)
Inferring condition-specific transcription factor function from DNA binding and gene expression data
Rachel Patton McCord et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
A systems approach to measuring the binding energy landscapes of transcription factors
Sebastian J. Maerkl et al.
SCIENCE (2007)
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
Michael F. Berger et al.
NATURE BIOTECHNOLOGY (2006)
Extensive low-affinity transcriptional interactions in the yeast genome
Amos Tanay
GENOME RESEARCH (2006)
DNA microarray technologies for measuring protein-DNA interactions
Martha L. Bulyk
CURRENT OPINION IN BIOTECHNOLOGY (2006)
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE
Barrett C. Foat et al.
BIOINFORMATICS (2006)
Linking DNA-binding proteins to their recognition sequences by using protein microarrays
Su-Wen Ho et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
FlyTF:: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster
Boris Adryan et al.
BIOINFORMATICS (2006)
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data
Bertrand R. Huber et al.
BMC BIOINFORMATICS (2006)
Defining the sequence-recognition profile of DNA-binding molecules
CL Warren et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
A global map of p53 transcription-factor binding sites in the human genome
CL Wei et al.
CELL (2006)
Computational identification of transcriptional regulatory elements in DNA sequence
Debraj GuhaThakurta
NUCLEIC ACIDS RESEARCH (2006)
Engineering zinc finger protein transcription factors: The therapeutic relevance of switching endogenous gene expression on or off at command
WM Gommans et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
enoLOGOS: a versatile web tool for energy normalized sequence logos
CT Workman et al.
NUCLEIC ACIDS RESEARCH (2005)
MAGIC, an in vivo genetic method for the rapid construction of recombinant DNA molecules
MZ Li et al.
NATURE GENETICS (2005)
A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks
John S. Reece-Hoyes et al.
GENOME BIOLOGY (2005)
Parallel, quantitative measurement of protein binding to a 120-element double-stranded DNA array in real time using surface plasmon resonance microscopy
JS Shumaker-Parry et al.
ANALYTICAL CHEMISTRY (2004)
Quantitative high-throughput analysis of transcription factor binding specificities
J Linnell et al.
NUCLEIC ACIDS RESEARCH (2004)
Mouse brain organization revealed through direct genome-scale TF expression analysis
PA Gray et al.
SCIENCE (2004)
Designing transcription factor architectures for drug discovery
P Blancafort et al.
MOLECULAR PHARMACOLOGY (2004)
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
S Mukherjee et al.
NATURE GENETICS (2004)
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
A Sandelin et al.
NUCLEIC ACIDS RESEARCH (2004)
An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression
DN Messina et al.
GENOME RESEARCH (2004)
Evaluating the binding affinities of NF-κB p50 homodimer to the wild-type and single-nucleotide mutant Ig-κB sites by the unimolecular dsDNA microarray
JK Wang et al.
ANALYTICAL BIOCHEMISTRY (2003)
Modulation of DNA-binding domains for sequence-specific DNA recognition
R Marmorstein et al.
GENE (2003)
Additivity in protein-DNA interactions: how good an approximation is it?
PV Benos et al.
NUCLEIC ACIDS RESEARCH (2002)
Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range
AM Dudley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Is there a code for protein-DNA recognition? Probab(ilistical)ly ...
PV Benos et al.
BIOESSAYS (2002)
Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors
ML Bulyk et al.
NUCLEIC ACIDS RESEARCH (2002)
Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
ML Bulyk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay
TK Man et al.
NUCLEIC ACIDS RESEARCH (2001)
Chromatin profiling using targeted DNA adenine methyltransferase
B van Steensel et al.
NATURE GENETICS (2001)
Genomic strategies to identify mammalian regulatory sequences
LA Pennacchio et al.
NATURE REVIEWS GENETICS (2001)
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
VR Iyer et al.
NATURE (2001)
Genome-wide location and function of DNA binding proteins
B Ren et al.
SCIENCE (2000)
Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
JL Reid et al.
MOLECULAR CELL (2000)
DNA binding sites: representation and discovery
GD Stormo
BIOINFORMATICS (2000)
TRANSFAC: an integrated system for gene expression regulation
E Wingender et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
