Journal
NATURE METHODS
Volume 10, Issue 9, Pages 869-+Publisher
NATURE PUBLISHING GROUP
DOI: 10.1038/NMETH.2601
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Funding
- US National Institutes of Health (NIH) National Cancer Institute Physical Sciences Oncology Center at Massachusetts Institute of Technology [U54CA143874]
- NIH Pioneer Award [8 DP1 CA174420-05]
- Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) Vici award
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We describe a method for fluorescence in situ identification of individual mRNA molecules, allowing quantitative and accurate measurement, in single cells, of allele-specific transcripts that differ by only a few nucleotides. By using a combination of allele-specific and non-allele-specific probe libraries, we achieve >95% detection accuracy. We investigate the allele-specific stochastic expression of Nanog, which encodes a pluripotency factor, in murine embryonic stem cells.
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