Related references
Note: Only part of the references are listed.CNAmet: an R package for integrating copy number, methylation and expression data
Riku Louhimo et al.
BIOINFORMATICS (2011)
Preprocessing and downstream analysis of microarray DNA copy number profiles
Mark A. van de Wiel et al.
BRIEFINGS IN BIOINFORMATICS (2011)
Hallmarks of Cancer: The Next Generation
Douglas Hanahan et al.
CELL (2011)
Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants
Ping Chen et al.
NUCLEIC ACIDS RESEARCH (2011)
The Characterisation of Three Types of Genes that Overlie Copy Number Variable Regions
Cara Woodwark et al.
PLOS ONE (2011)
Exploring the Genomes of Cancer Cells: Progress and Promise
Michael R. Stratton
SCIENCE (2011)
The molecular biology of head and neck cancer
C. Rene Leemans et al.
NATURE REVIEWS CANCER (2011)
DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data
Keyan Salari et al.
BIOINFORMATICS (2010)
CAM: A web tool for combining array CGH and microarray gene expression data from multiple samples
Mira Oh et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2010)
Recurrent Copy Number Gain of Transcription Factor SOX2 and Corresponding High Protein Expression in Oral Squamous Cell Carcinoma
Koija Freier et al.
GENES CHROMOSOMES & CANCER (2010)
A Double-Layered Mixture Model for the Joint Analysis of DNA Copy Number and Gene Expression Data
Hyungwon Choi et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2010)
The landscape of somatic copy-number alteration across human cancers
Rameen Beroukhim et al.
NATURE (2010)
Genomic instability - an evolving hallmark of cancer
Simona Negrini et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)
Genomic and functional analysis identifies CRKL as an oncogene amplified in lung cancer
Y. H. Kim et al.
ONCOGENE (2010)
Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme
Kristian Ovaska et al.
GENOME MEDICINE (2010)
Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities
Martin Schaefer et al.
BIOINFORMATICS (2009)
integrOmics: an R package to unravel relationships between two omics datasets
Kim-Anh Le Cao et al.
BIOINFORMATICS (2009)
Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression
Wessel N. van Wieringen et al.
BIOMETRICS (2009)
Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Renee X. Menezes et al.
BMC BIOINFORMATICS (2009)
Progressive Tumor Formation in Mice with Conditional Deletion of TGF-β Signaling in Head and Neck Epithelia Is Associated with Activation of the PI3K/Akt Pathway
Yansong Bian et al.
CANCER RESEARCH (2009)
The MET Receptor Tyrosine Kinase Is a Potential Novel Therapeutic Target for Head and Neck Squamous Cell Carcinoma
Tanguy Y. Seiwert et al.
CANCER RESEARCH (2009)
Functional Genomic Analysis Identified Epidermal Growth Factor Receptor Activation as the Most Common Genetic Event in Oral Squamous Cell Carcinoma
Jim Jinn-Chyuan Sheu et al.
CANCER RESEARCH (2009)
Ensembl 2009
T. J. P. Hubbard et al.
NUCLEIC ACIDS RESEARCH (2009)
A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets
Silvio Bicciato et al.
NUCLEIC ACIDS RESEARCH (2009)
Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
Hyunju Lee et al.
BIOINFORMATICS (2008)
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
L. Chin et al.
NATURE (2008)
Molecular origins of cancer: Oncogenes and cancer
Carlo M. Croce
NEW ENGLAND JOURNAL OF MEDICINE (2008)
Chromosomal abnormalities in cancer
Stefan Froehling et al.
NEW ENGLAND JOURNAL OF MEDICINE (2008)
Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
Rameen Beroukhim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Amplicon mapping and expression profiling identify the fas-associated death domain gene as a new driver in the 11q13.3 amplicon in Laryngeal/Pharyngeal cancer
Johan H. Gibcus et al.
CLINICAL CANCER RESEARCH (2007)
Frequent overexpression of the genes FXR1, CLAPM1 and E1F4G located on amplicon 3q26-27 in squamous cell carcinoma of the lung
Nicole Comtesse et al.
INTERNATIONAL JOURNAL OF CANCER (2007)
Unr, a cytoplasmic RNA-binding protein with cold-shock domains, is involved in control of apoptosis in ES and HuH7 cells
V. Dormoy-Raclet et al.
ONCOGENE (2007)
CGHcall: calling aberrations for array CGH tumor profiles
Mark A. van de Wiel et al.
BIOINFORMATICS (2007)
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
Koei Chin et al.
CANCER CELL (2006)
Quantitative real-time RT-PCR data analysis:: current concepts and the novel gene expression's CT difference formula
Jan H. Schefe et al.
JOURNAL OF MOLECULAR MEDICINE-JMM (2006)
Squamous cell carcinoma related oncogene/DCUN1D1 is highly conserved and activated by amplification in squamous cell carcinomas
Inderpal Sarkaria et al.
CANCER RESEARCH (2006)
Transcript mapping with high-density oligonucleotide tiling arrays
Wolfgang Huber et al.
BIOINFORMATICS (2006)
Identification and validation of oncogenes in liver cancer using an integrative oncogenomic approach
Lars Zender et al.
CELL (2006)
Loss of transforming growth factor-β type II receptor promotes metastatic head-and-neck squamous cell carcinoma
Shi-Long Lu et al.
GENES & DEVELOPMENT (2006)
Alteration of RPL14 in squamous cell carcinomas and preneoplastic lesions of the esophagus
XP Huang et al.
GENE (2006)
Nras loss induces metastatic conversion of Rb1-deficient neuroendocrine thyroid tumor
C Takahashi et al.
NATURE GENETICS (2006)
Jointly analyzing gene expression and copy number data in breast cancer using data reduction models
JA Berger et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2006)
A comparison study: applying segmentation to array CGH data for downstream analyses
H Willenbrock et al.
BIOINFORMATICS (2005)
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
WR Lai et al.
BIOINFORMATICS (2005)
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
MW Pfaffl et al.
BIOTECHNOLOGY LETTERS (2004)
Opinion - Integrated global profiling of cancer
S Hanash
NATURE REVIEWS CANCER (2004)
A strategy for identifying putative causes of gene expression variation in human cancers
S Hautaniemi et al.
JOURNAL OF THE FRANKLIN INSTITUTE-ENGINEERING AND APPLIED MATHEMATICS (2004)
Circular binary segmentation for the analysis of array-based DNA copy number data
AB Olshen et al.
BIOSTATISTICS (2004)
Chromosome aberrations in solid tumors
DG Albertson et al.
NATURE GENETICS (2003)
FHIT:: from gene discovery to cancer treatment and prevention
Y Pekarsky et al.
LANCET ONCOLOGY (2002)
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
JR Pollack et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
High-resolution mapping of the 11q13 amplicon and identification of a gene, TAOS1, that is amplified and overexpressed in oral cancer cells
X Huang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Frequent 3p allele loss and epigenetic inactivation of the RASSF1A tumour suppressor gene from region 3p21.3 in head and neck squamous cell carcinoma
RP Hogg et al.
EUROPEAN JOURNAL OF CANCER (2002)
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
Jo Vandesompele et al.
GENOME BIOLOGY (2002)
Transcript map of the 8p23 putative tumor suppressor region
PC Sun et al.
GENOMICS (2001)
AIS is an oncogene amplified in squamous cell carcinoma
K Hibi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Assessing the accuracy of prediction algorithms for classification: an overview
P Baldi et al.
BIOINFORMATICS (2000)
Share Paper
