Related references
Note: Only part of the references are listed.False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule
Nitin Gupta et al.
JOURNAL OF PROTEOME RESEARCH (2009)
Spectral Dictionaries INTEGRATING DE NOVO PEPTIDE SEQUENCING WITH DATABASE SEARCH OF TANDEM MASS SPECTRA
Sangtae Kim et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Identification of Early Intestinal Neoplasia Protein Biomarkers Using Laser Capture Microdissection and MALDI MS
Baogang J. Xu et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins
Yufeng Shen et al.
ANALYTICAL CHEMISTRY (2008)
Near-optimal hashing algorithms for approximate nearest neighbor in high dimensions
Alexandr Andoni et al.
COMMUNICATIONS OF THE ACM (2008)
Algorithm for identification of fusion proteins via mass spectrometry
Julio Ng et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification
Magno Junqueira et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies
Brian C. Searle et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Clustering millions of tandem mass spectra
Ari M. Frank et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Targeted discovery of novel human exons by comparative genomics
Adam Siepel et al.
GENOME RESEARCH (2007)
Implementation and application of a versatile clustering tool for tandem mass spectrometry data
Kristian Flikka et al.
PROTEOMICS (2007)
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
Nitin Gupta et al.
GENOME RESEARCH (2007)
Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing
Patrice Waridel et al.
PROTEOMICS (2007)
Protein identification by spectral networks analysis
Nuno Bandeira et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Development and validation of a spectral library searching method for peptide identification from MS/MS
Henry Lam et al.
PROTEOMICS (2007)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
msmsEval: tandem mass spectral quality assignment for high-throughput proteomics
Jason W. H. Wong et al.
BMC BIOINFORMATICS (2007)
Improving gene annotation using peptide mass spectrometry
Stephen Tanner et al.
GENOME RESEARCH (2007)
Methods for peptide identification by spectral comparison
Jian Liu et al.
PROTEOME SCIENCE (2007)
Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline
Navdeep Jaitly et al.
ANALYTICAL CHEMISTRY (2006)
Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries
Barbara E. Frewen et al.
ANALYTICAL CHEMISTRY (2006)
Using annotated peptide mass spectrum libraries for protein identification
R. Craig et al.
JOURNAL OF PROTEOME RESEARCH (2006)
A fast coarse filtering method for peptide identification by mass spectrometry
Smriti R. Ramakrishnan et al.
BIOINFORMATICS (2006)
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data - Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides
AI Nesvizhskii et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering
K Flikka et al.
PROTEOMICS (2006)
Quality classification of tandem mass spectrometry data
J Salmi et al.
BIOINFORMATICS (2006)
Identification of post-translational modifications by blind search of mass spectra
D Tsur et al.
NATURE BIOTECHNOLOGY (2005)
Proteomics-grade de novo sequencing approach
MM Savitski et al.
JOURNAL OF PROTEOME RESEARCH (2005)
MS2Grouper: Group assessment and synthetic replacement of duplicate proteomic tandem mass spectra
DL Tabb et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2005)
InsPecT: Identification of posttransiationally modified peptides from tandem mass spectra
S Tanner et al.
ANALYTICAL CHEMISTRY (2005)
PepNovo: De novo peptide sequencing via probabilistic network modeling
A Frank et al.
ANALYTICAL CHEMISTRY (2005)
Targeted comparative proteomics by liquid chromatography-tandem Fourier ion cyclotron resonance mass spectrometry
C Masselon et al.
ANALYTICAL CHEMISTRY (2005)
Improving large-scale proteomics by clustering of mass spectrometry data
I Beer et al.
PROTEOMICS (2004)
Automatic Quality Assessment of Peptide Tandem Mass Spectra
Marshall Bern et al.
BIOINFORMATICS (2004)
Proteogenomic mapping as a complementary method to perform genome annotation
JD Jaffe et al.
PROTEOMICS (2004)
Similarity among Tandem Mass Spectra from Proteomic Experiments: Detection, Significance, and Utility
DL Tabb et al.
ANALYTICAL CHEMISTRY (2003)
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry
B Ma et al.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2003)
Comparing similar spectra: From similarity index to spectral contrast angle
KX Wan et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2002)
Matching peptide mass spectra to EST and genomic DNA databases
JS Choudhary et al.
TRENDS IN BIOTECHNOLOGY (2001)
Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching
A Shevchenko et al.
ANALYTICAL CHEMISTRY (2001)