Related references
Note: Only part of the references are listed.Fast and SNP-tolerant detection of complex variants and splicing in short reads
Thomas D. Wu et al.
BIOINFORMATICS (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Mitchell Guttman et al.
NATURE BIOTECHNOLOGY (2010)
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
Kin Fai Au et al.
NUCLEIC ACIDS RESEARCH (2010)
A Statistical Method for the Detection of Alternative Splicing Using RNA-Seq
Liguo Wang et al.
PLOS ONE (2010)
Global and unbiased detection of splice junctions from RNA-seq data
Adam Ameur et al.
GENOME BIOLOGY (2010)
Statistical inferences for isoform expression in RNA-Seq
Hui Jiang et al.
BIOINFORMATICS (2009)
De novo transcriptome assembly with ABySS
Inanc Birol et al.
BIOINFORMATICS (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
mRNA-Seq whole-transcriptome analysis of a single cell
Fuchou Tang et al.
NATURE METHODS (2009)
Cancer-associated regulation of alternative splicing
Julian P. Venables et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Ensembl 2009
T. J. P. Hubbard et al.
NUCLEIC ACIDS RESEARCH (2009)
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
Moran Yassour et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing
Ryan D. Morin et al.
BIOTECHNIQUES (2008)
Multiple alternative splicing markers for ovarian cancer
Roscoe Klinck et al.
CANCER RESEARCH (2008)
Identification of Alternative Splicing Markers for Breast Cancer
Julian P. Venables et al.
CANCER RESEARCH (2008)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Qun Pan et al.
NATURE GENETICS (2008)
Stem cell transcriptome profiling via massive-scale mRNA sequencing
Nicole Cloonan et al.
NATURE METHODS (2008)
ALEXA: a microarray design platform for alternative expression analysis
Malachi Griffith et al.
NATURE METHODS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model
Hairi Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
Marc Sultan et al.
SCIENCE (2008)
Annotating genomes with massive-scale RNA sequencing
France Denoeud et al.
GENOME BIOLOGY (2008)
Genome-wide expression analysis of therapy-resistant tumors reveals SPARC as a novel target for cancer therapy
IT Tai et al.
JOURNAL OF CLINICAL INVESTIGATION (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
Q Pan et al.
MOLECULAR CELL (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
JM Johnson et al.
SCIENCE (2003)