Related references
Note: Only part of the references are listed.Bioinformatics analysis of mass spectrometry-based proteomics data sets
Chanchal Kumar et al.
FEBS LETTERS (2009)
Systems-wide Analysis of a Phosphatase Knock-down by Quantitative Proteomics and Phosphoproteomics
Maximiliane Hilger et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
Terri A. Addona et al.
NATURE BIOTECHNOLOGY (2009)
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
Alexander W. Bell et al.
NATURE METHODS (2009)
Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
Sangtae Kim et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Combined use of RNAi and quantitative proteomics to study gene function in Drosophila
Tiziana Bonaldi et al.
MOLECULAR CELL (2008)
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
Lyris M. F. de Godoy et al.
NATURE (2008)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Precision proteomics: The case for high resolution and high mass accuracy
Matthias Mann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
PhosphoPep-a phosphoproteome resource for systems biology research in Drosophila Kc167 cells
Bernd Bodenmiller et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Reproducible isolation of distinct, overlapping segments of the phosphoproteome
Bernd Bodenmiller et al.
NATURE METHODS (2007)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Jesper V. Olsen et al.
CELL (2006)
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
JE Elias et al.
NATURE METHODS (2005)
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
JV Olsen et al.
MOLECULAR & CELLULAR PROTEOMICS (2004)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)