Related references
Note: Only part of the references are listed.Transposase mediated construction of RNA-seq libraries
Jason Gertz et al.
GENOME RESEARCH (2012)
Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
Jae Hoon Bahn et al.
GENOME RESEARCH (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
Reza Kalhor et al.
NATURE BIOTECHNOLOGY (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Genomic approaches towards finding cis-regulatory modules in animals
Ross C. Hardison et al.
NATURE REVIEWS GENETICS (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
Alan P. Boyle et al.
GENOME RESEARCH (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
Eitan Yaffe et al.
NATURE GENETICS (2011)
ChIP-Seq: technical considerations for obtaining high-quality data
Benjamin L. Kidder et al.
NATURE IMMUNOLOGY (2011)
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Likun Wang et al.
BIOINFORMATICS (2010)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing
Peng Cui et al.
GENOMICS (2010)
Transcriptome genetics using second generation sequencing in a Caucasian population
Stephen B. Montgomery et al.
NATURE (2010)
Understanding mechanisms underlying human gene expression variation with RNA sequencing
Joseph K. Pickrell et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Mitchell Guttman et al.
NATURE BIOTECHNOLOGY (2010)
De novo assembly and analysis of RNA-seq data
Gordon Robertson et al.
NATURE METHODS (2010)
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Yarden Katz et al.
NATURE METHODS (2010)
RNA-Seq analysis to capture the transcriptome landscape of a single cell
Fuchou Tang et al.
NATURE PROTOCOLS (2010)
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
Kai Wang et al.
NUCLEIC ACIDS RESEARCH (2010)
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
Guoliang Li et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
An oestrogen-receptor-α-bound human chromatin interactome
Melissa J. Fullwood et al.
NATURE (2009)
Limitations and possibilities of small RNa digital gene expression profiling
Sam E. V. Linsen et al.
NATURE METHODS (2009)
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
Jay R. Hesselberth et al.
NATURE METHODS (2009)
Transcriptome analysis by strand-specific sequencing of complementary DNA
Dmitri Parkhomchuk et al.
NUCLEIC ACIDS RESEARCH (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
F-Seq: a feature density estimator for high-throughput sequence tags
Alan P. Boyle et al.
BIOINFORMATICS (2008)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Stem cell transcriptome profiling via massive-scale mRNA sequencing
Nicole Cloonan et al.
NATURE METHODS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
High-resolution circular chromosome conformation capture assay
Anita Gondor et al.
NATURE PROTOCOLS (2008)
Mapping networks of physical interactions between genomic elements using 5C technology
Josee Dostie et al.
NATURE PROTOCOLS (2007)
The RIN: an RNA integrity number for assigning integrity values to RNA measurements
A Schroeder et al.
BMC MOLECULAR BIOLOGY (2006)
High-throughput localization of functional elements by quantitative chromatin profiting
M Dorschner et al.
NATURE METHODS (2004)
Discovery of functional noncoding elements by digital analysis of chromatin structure
PJ Sabo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)