4.8 Article

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Graph accordance of next-generation sequence assemblies

Guohui Yao et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

Marcel H. Schulz et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Expression regulation triggers oncogenicity of xmrk alleles in the Xiphophorus melanoma system

Janine Regneri et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY (2012)

Article Virology

An Endogenous Foamy Virus in the Aye-Aye (Daubentonia madagascariensis)

Guan-Zhu Han et al.

JOURNAL OF VIROLOGY (2012)

Article Microbiology

An Endogenous Foamy-like Viral Element in the Coelacanth Genome

Guan-Zhu Han et al.

PLOS PATHOGENS (2012)

Review Oncology

Comprehensive Field Synopsis and Systematic Meta-analyses of Genetic Association Studies in Cutaneous Melanoma

Foteini Chatzinasiou et al.

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2011)

Article Genetics & Heredity

Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences

Julian M. Catchen et al.

G3-GENES GENOMES GENETICS (2011)

Review Oncology

Genetic and environmental melanoma models in fish

E. Elizabeth Patton et al.

PIGMENT CELL & MELANOMA RESEARCH (2010)

Article Genetics & Heredity

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

Paul A. Hohenlohe et al.

PLOS GENETICS (2010)

Review Ecology

Evolution of Placentas in the Fish Family Poeciliidae: An Empirical Study of Macroevolution

B. J. A. Pollux et al.

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Evolutionary Biology

Pigmentation Pathway Evolution after Whole-Genome Duplication in Fish

Ingo Braasch et al.

GENOME BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Automated identification of conserved synteny after whole-genome duplication

Julian M. Catchen et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

Macroevolution of Complex Retroviruses

Aris Katzourakis et al.

SCIENCE (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

Loss of egg yolk genes in mammals and the origin of lactation and placentation

David Brawand et al.

PLOS BIOLOGY (2008)

Review Genetics & Heredity

A unified classification system for eukaryotic transposable elements

Thomas Wicker et al.

NATURE REVIEWS GENETICS (2007)

Review Genetics & Heredity

Mammalian karyotype evolution

Malcolm A. Ferguson-Smith et al.

NATURE REVIEWS GENETICS (2007)

Article Biochemistry & Molecular Biology

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

Zhao Xu et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes

Tomas Hrbek et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Regulation of CDKN2A/B and Retinoblastoma genes in Xiphophorus melanoma

Andrew P. Butler et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY (2007)

Review Genetics & Heredity

From Mendelian to molecular genetics:: the Xiphophorus melanoma model

Svenja Meierjohann et al.

TRENDS IN GENETICS (2006)

Article Biochemical Research Methods

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

Oleksiy Kohany et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs

Dirk Steinke et al.

JOURNAL OF MOLECULAR EVOLUTION (2006)

Article Biochemical Research Methods

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

TD Wu et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Bayes empirical Bayes inference of amino acid sites under positive selection

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Genetics & Heredity

A microsatellite genetic linkage map for xiphophorus

RB Walter et al.

GENETICS (2004)

Article Multidisciplinary Sciences

Placental-specific insulin-like growth factor 2 (Igf2) regulates the diffusional exchange characteristics of the mouse placenta

CP Sibley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemical Research Methods

Gene prediction with a hidden Markov model and a new intron submodel

Mario Stanke et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

PCAP: A whole-genome assembly program

XQ Huang et al.

GENOME RESEARCH (2003)

Review Genetics & Heredity

The evolution, distribution and diversity of endogenous retroviruses

R Gifford et al.

VIRUS GENES (2003)

Article Genetics & Heredity

Diversity of retrotransposable elements in compact pufferfish genomes

JN Volff et al.

TRENDS IN GENETICS (2003)

Article Biochemistry & Molecular Biology

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences

M Miya et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2003)

Article Biotechnology & Applied Microbiology

Genetic analysis of susceptibility to spontaneous and UV-induced carcinogenesis in Xiphophorus hybrid fish

RS Nairn et al.

MARINE BIOTECHNOLOGY (2001)

Article Biotechnology & Applied Microbiology

Genetic analysis of neoplasia induced by N-nitroso-N-methylurea in Xiphophorus hybrid fish

S Kazianis et al.

MARINE BIOTECHNOLOGY (2001)