4.8 Article

Population genomics of post-vaccine changes in pneumococcal epidemiology

Related references

Note: Only part of the references are listed.
Article Immunology

Pneumococcal Capsular Switching: A Historical Perspective

Kelly L. Wyres et al.

JOURNAL OF INFECTIOUS DISEASES (2013)

Article Biochemistry & Molecular Biology

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Alexei J. Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Detection of recombination events in bacterial genomes from large population samples

Pekka Marttinen et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Pediatrics

Trends in Antibiotic Use in Massachusetts Children, 2000-2009

Sharon K. Greene et al.

PEDIATRICS (2012)

Article Microbiology

A High-Resolution View of Genome-Wide Pneumococcal Transformation

Nicholas J. Croucher et al.

PLOS PATHOGENS (2012)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Immunology

Carried Pneumococci in Massachusetts Children The Contribution of Clonal Expansion and Serotype Switching

William P. Hanage et al.

PEDIATRIC INFECTIOUS DISEASE JOURNAL (2011)

Article Multidisciplinary Sciences

Rapid Pneumococcal Evolution in Response to Clinical Interventions

Nicholas J. Croucher et al.

SCIENCE (2011)

Article Biochemical Research Methods

Efficient construction of an assembly string graph using the FM-index

Jared T. Simpson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

Simon R. Harris et al.

SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

Claudio Donati et al.

GENOME BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production

Juan Lucas Argueso et al.

GENOME RESEARCH (2009)

Article Biochemical Research Methods

Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach

Jing Tang et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Microbiology

Pneumococcal Capsular Polysaccharide Structure Predicts Serotype Prevalence

Daniel M. Weinberger et al.

PLOS PATHOGENS (2009)

Article Biochemical Research Methods

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

Tim Carver et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Immunology

Differential Effects of Pneumococcal Vaccines against Serotypes 6A and 6C

In H. Park et al.

JOURNAL OF INFECTIOUS DISEASES (2008)

Article Immunology

Population snapshot of emergent streptococcus pneumoniae serotype 19A in the United States, 2005

Matthew R. Moore et al.

JOURNAL OF INFECTIOUS DISEASES (2008)

Article Biochemical Research Methods

Identifying bacterial genes and endosymbiont DNA with Glimmer

Arthur L. Delcher et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Relaxed phylogenetics and dating with confidence

Alexei J. Drummond et al.

PLOS BIOLOGY (2006)

Article Medicine, General & Internal

Effect of introduction of the pneumococcal conjugate vaccine on drug-resistant Streptococcus pneumoniae

MH Kyaw et al.

NEW ENGLAND JOURNAL OF MEDICINE (2006)

Article Immunology

Emergence of vaccine-related pneumococcal serotypes as a cause of bacteremia

AP Steenhoff et al.

CLINICAL INFECTIOUS DISEASES (2006)

Article Genetics & Heredity

Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes

Stephen D. Bentley et al.

PLOS GENETICS (2006)

Article Multidisciplinary Sciences

A pneumococcal pilus influences virulence and host inflammatory responses

MA Barocchi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Bayesian coalescent inference of past population dynamics from molecular sequences

AJ Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemical Research Methods

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

A Stamatakis et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Medicine, General & Internal

Decline in invasive pneumococcal disease after the introduction of protein-polysaccharide conjugate vaccine

CG Whitney et al.

NEW ENGLAND JOURNAL OF MEDICINE (2003)

Article Biochemistry & Molecular Biology

The bioperl toolkit:: Perl modules for the life sciences

JE Stajich et al.

GENOME RESEARCH (2002)

Article Medicine, General & Internal

Macrolide resistance among invasive Streptococcus pneumoniae isolates

TB Hyde et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2001)

Article Medicine, General & Internal

Increasing prevalence of multidrug-resistant Streptococcus pneumoniae in the United States.

CG Whitney et al.

NEW ENGLAND JOURNAL OF MEDICINE (2000)

Article Biochemistry & Molecular Biology

The COG database: a tool for genome-scale analysis of protein functions and evolution

RL Tatusov et al.

NUCLEIC ACIDS RESEARCH (2000)