Related references
Note: Only part of the references are listed.Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome
Corinne Ferrier Maurice et al.
CELL (2013)
Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome
Shin Yoshimoto et al.
NATURE (2013)
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Morgan G. I. Langille et al.
NATURE BIOTECHNOLOGY (2013)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
IMG: the integrated microbial genomes database and comparative analysis system
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2012)
Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities
John Martin et al.
PLOS ONE (2012)
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
Sahar Abubucker et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health
Wendy R. Russell et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2011)
Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats
K. B. M. Saiful Islam et al.
GASTROENTEROLOGY (2011)
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
Alan W. Walker et al.
ISME JOURNAL (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice
Jeremiah J. Faith et al.
SCIENCE (2011)
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Brian D. Muegge et al.
SCIENCE (2011)
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
Gary D. Wu et al.
SCIENCE (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Dissecting the in Vivo Metabolic Potential of Two Human Gut Acetogens
Federico E. Rey et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
Peter J. Turnbaugh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
Carlotta De Filippo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A Catalog of Reference Genomes from the Human Microbiome
Karen E. Nelson et al.
SCIENCE (2010)
The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
Peter J. Turnbaugh et al.
SCIENCE TRANSLATIONAL MEDICINE (2009)
Rubus chlorotic mottle virus, a new sobemovirus infecting raspberry and bramble
W. J. McGavin et al.
VIRUS RESEARCH (2009)
fdrtool: a versatile R package for estimating local and tail area-based false discovery rates
Korbinian Strimmer
BIOINFORMATICS (2008)
Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
Sylvia H. Duncan et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Microbial ecology - Human gut microbes associated with obesity
Ruth E. Ley et al.
NATURE (2006)
An obesity-associated gut microbiome with increased capacity for energy harvest
Peter J. Turnbaugh et al.
NATURE (2006)
Carriage, quantification, and predominance of methanogens and sulfate-reducing bacteria in faecal samples
J. A. Stewart et al.
LETTERS IN APPLIED MICROBIOLOGY (2006)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Bile salt biotransformations by human intestinal bacteria
JM Ridlon et al.
JOURNAL OF LIPID RESEARCH (2006)
RNA viral community in human feces: Prevalence of plant pathogenic viruses
T Zhang et al.
PLOS BIOLOGY (2006)
Accurate enzymatic measurement of fecal bile acids in patients with malabsorption
JL Porter et al.
JOURNAL OF LABORATORY AND CLINICAL MEDICINE (2003)
SSAHA: A fast search method for large DNA databases
ZM Ning et al.
GENOME RESEARCH (2001)
Molecular ecological analysis of the succession and diversity of sulfate-reducing bacteria in the mouse gastrointestinal tract
B Deplancke et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)