Related references
Note: Only part of the references are listed.The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces
Garrett P. League et al.
FEMS YEAST RESEARCH (2012)
Statistics and Truth in Phylogenomics
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
Boc Alix et al.
NUCLEIC ACIDS RESEARCH (2012)
Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny
Jeffrey P. Townsend et al.
SYSTEMATIC BIOLOGY (2012)
The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection
Yun Yu et al.
PLOS GENETICS (2012)
Resolving the evolutionary relationships of molluscs with phylogenomic tools
Stephen A. Smith et al.
NATURE (2011)
Phylogenomics reveals deep molluscan relationships
Kevin M. Kocot et al.
NATURE (2011)
Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade
Leonidas Salichos et al.
PLOS ONE (2011)
Sources of Signal in 62 Protein-Coding Nuclear Genes for Higher-Level Phylogenetics of Arthropods
Jerome C. Regier et al.
PLOS ONE (2011)
Addressing Inter-Gene Heterogeneity in Maximum Likelihood Phylogenomic Analysis: Yeasts Revisited
Jaqueline Hess et al.
PLOS ONE (2011)
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus
Devin R. Scannell et al.
G3-GENES GENOMES GENETICS (2011)
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
Herve Philippe et al.
PLOS BIOLOGY (2011)
Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser
David A. Fitzpatrick et al.
BMC GENOMICS (2010)
Large-Scale Parsimony Analysis of Metazoan Indels in Protein-Coding Genes
Frida Belinky et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
Jerome C. Regier et al.
NATURE (2010)
Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi
Jason C. Slot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life
Chris Todd Hittinger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Phylogenomics Revives Traditional Views on Deep Animal Relationships
Herve Philippe et al.
CURRENT BIOLOGY (2009)
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
Maite Novo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Estimating Species Phylogenies Using Coalescence Times among Sequences
Liang Liu et al.
SYSTEMATIC BIOLOGY (2009)
Gene tree discordance, phylogenetic inference and the multispecies coalescent
James H. Degnan et al.
TRENDS IN ECOLOGY & EVOLUTION (2009)
Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern Urmetazoon Hypothesis
Bernd Schierwater et al.
PLOS BIOLOGY (2009)
Recent developments in the MAFFT multiple sequence alignment program
Kazutaka Katoh et al.
BRIEFINGS IN BIOINFORMATICS (2008)
Broad phylogenomic sampling improves resolution of the animal tree of life
Casey W. Dunn et al.
NATURE (2008)
Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence
Jerome C. Regier et al.
SYSTEMATIC BIOLOGY (2008)
Yeast genome evolution - the origin of the species
Devin R. Scannell et al.
YEAST (2007)
Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements
Igor B. Rogozin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
David A. Fitzpatrick et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida
Sarah J. Bourlat et al.
NATURE (2006)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Bushes in the tree of life
Antonis Rokas et al.
PLOS BIOLOGY (2006)
Phylogenomics: the beginning of incongruence?
O Jeffroy et al.
TRENDS IN GENETICS (2006)
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
DR Scannell et al.
NATURE (2006)
Tunicates and not cephalochordates are the closest living relatives of vertebrates
F Delsuc et al.
NATURE (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Animal evolution and the molecular signature of radiations compressed in time
A Rokas et al.
SCIENCE (2005)
The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
KP Byrne et al.
GENOME RESEARCH (2005)
Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae
C Hall et al.
EUKARYOTIC CELL (2005)
More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
A Rokas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
A phase transition for a random cluster model on phylogenetic trees
E Mossel et al.
MATHEMATICAL BIOSCIENCES (2004)
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
CT Hittinger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Genome-scale phylogeny and the detection of systematic biases
MJ Phillips et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Using consensus networks to visualize contradictory evidence for species phylogeny
BR Holland et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
GOstat: find statistically overrepresented Gene Ontologies within a group of genes
T Beissbarth et al.
BIOINFORMATICS (2004)
Genome-scale approaches to resolving incongruence in molecular phylogenies
A Rokas et al.
NATURE (2003)
MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
BIOINFORMATICS (2003)
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
S Whelan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)