4.8 Article

Discovery of new enzymes and metabolic pathways by using structure and genome context

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Measurement of marine osmolytes in mammalian serum by liquid chromatography-tandem mass spectrometry

Crystal C. Lenky et al.

ANALYTICAL BIOCHEMISTRY (2012)

Article Biochemical Research Methods

Pythoscape: a framework for generation of large protein similarity networks

Alan E. Barber et al.

BIOINFORMATICS (2012)

Review Biochemistry & Molecular Biology

Divergent Evolution in Enolase Superfamily: Strategies for Assigning Functions

John A. Gerlt et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biochemistry & Molecular Biology

Control of hydroxyproline catabolism in Sinorhizobium meliloti

Catharine E. White et al.

MOLECULAR MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis

Tobias J. Erb et al.

NATURE CHEMICAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

Arren Bar-Even et al.

BIOCHEMISTRY (2011)

Article Biochemistry & Molecular Biology

The Enzyme Function Initiative

John A. Gerlt et al.

BIOCHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Studying Enzyme-Substrate Specificity in Silico: A Case Study of the Escherichia coli Glycolysis Pathway

Chakrapani Kalyanaraman et al.

BIOCHEMISTRY (2010)

Article Biochemical Research Methods

Determination of betaine metabolites and dimethylsulfoniopropionate in coral tissues using liquid chromatography-time-of-flight mass spectrometry and stable isotope-labeled internal standards

Chao Li et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2010)

Article Biochemical Research Methods

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

Alexandra M. Schnoes et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Multidisciplinary Sciences

Structure-based activity prediction for an enzyme of unknown function

Johannes C. Hermann et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Prediction and assignment of function for a divergent N-succinyl amino acid racemase

Ling Song et al.

NATURE CHEMICAL BIOLOGY (2007)

Article Chemistry, Multidisciplinary

Phaser crystallographic software

Airlie J. McCoy et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)

Article Chemistry, Multidisciplinary

Predicting substrates by docking high-energy intermediates to enzyme structures

Johannes C. Hermann et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Chemistry, Medicinal

Extra precision glide: Docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes

Richard A. Friesner et al.

JOURNAL OF MEDICINAL CHEMISTRY (2006)

Article Biochemical Research Methods

The integration of macromolecular diffraction data

AGW Leslie

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2006)

Article Biochemical Research Methods

Scaling and assessment of data quality

P Evans

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2006)

Article Biochemical Research Methods

Protein production by auto-induction in high-density shaking cultures

FW Studier

PROTEIN EXPRESSION AND PURIFICATION (2005)

Article Biochemistry & Molecular Biology

Virtual screening against highly charged active sites: Identifying substrates of alpha-beta barrel enzymes

C Kalyanaraman et al.

BIOCHEMISTRY (2005)

Review Biochemistry & Molecular Biology

Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity

JA Gerlt et al.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2005)

Article Biochemistry & Molecular Biology

MAFFT version 5: improvement in accuracy of multiple sequence alignment

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

PRODRG:: a tool for high-throughput crystallography of protein-ligand complexes

AW Schüttelkopf et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)

Article Biochemical Research Methods

Coot:: model-building tools for molecular graphics

P Emsley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)