Related references
Note: Only part of the references are listed.A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes
Daniel G. MacArthur et al.
SCIENCE (2012)
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
Kevin Y. Yip et al.
GENOME BIOLOGY (2012)
TIP: A probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles
Chao Cheng et al.
BIOINFORMATICS (2011)
Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis
Noa Novershtern et al.
CELL (2011)
AlleleSeq: analysis of allele-specific expression and binding in a network framework
Joel Rozowsky et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
A high-resolution map of human evolutionary constraint using 29 mammals
Kerstin Lindblad-Toh et al.
NATURE (2011)
The BioGRID Interaction Database: 2011 update
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2011)
Motifs emerge from function in model gene regulatory networks
Z. Burda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Understanding gene circuits at cell-fate branch points for rational cell reprogramming
Joseph X. Zhou et al.
TRENDS IN GENETICS (2011)
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data
Chao Cheng et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man
Timothy Ravasi et al.
CELL (2010)
Networking erythropoiesis
Marc A. Kerenyi et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2010)
A map of human genome variation from population-scale sequencing
David Altshuler et al.
NATURE (2010)
Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels
Nitin Bhardwaj et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Heritable Individual-Specific and Allele-Specific Chromatin Signatures in Humans
Ryan McDaniell et al.
SCIENCE (2010)
Rewiring of Transcriptional Regulatory Networks: Hierarchy, Rather than Connectivity, Better Reflects the Importance of Regulators
Nitin Bhardwaj et al.
SCIENCE SIGNALING (2010)
Most mammalian mRNAs are conserved targets of microRNAs
Robin C. Friedman et al.
GENOME RESEARCH (2009)
Chromatin poises miRNA- and protein-coding genes for expression
Artem Barski et al.
GENOME RESEARCH (2009)
Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
Raja Jothi et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
A census of human transcription factors: function, expression and evolution
Juan M. Vaquerizas et al.
NATURE REVIEWS GENETICS (2009)
Cohesins functionally associate with CTCF on mammalian chromosome arms
Vania Parelho et al.
CELL (2008)
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
Xi Chen et al.
CELL (2008)
Chromatin structure analyses identify miRNA promoters
Fatih Ozsolak et al.
GENES & DEVELOPMENT (2008)
CTCF physically links cohesin to chromatin
Eric D. Rubio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Genome-Wide Occupancy of SREBP1 and Its Partners NFY and SP1 Reveals Novel Functional Roles and Combinatorial Regulation of Distinct Classes of Genes
Brian D. Reed et al.
PLOS GENETICS (2008)
Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context
Philip M. Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E-coli
S. Balaji et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Genetic reconstruction of a functional transcriptional regulatory network
Zhanzhi Hu et al.
NATURE GENETICS (2007)
Hierarchy and feedback in the evolution of the Escherichia coli transcription network
M. Cosentino Lagomarsino et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Integrating physical and genetic maps: from genomes to interaction networks
Andreas Beyer et al.
NATURE REVIEWS GENETICS (2007)
Genomic analysis of the hierarchical structure of regulatory networks
Haiyuan Yu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks
S. Balaji et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Design principles of molecular networks revealed by global comparisons and composite motifs
Haiyuan Yu et al.
GENOME BIOLOGY (2006)
Global analysis of protein phosphorylation in yeast
J Ptacek et al.
NATURE (2005)
Core transcriptional regulatory circuitry in human embryonic stem cells
LA Boyer et al.
CELL (2005)
Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli
G Balázsi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach -: art. no. 199
HW Ma et al.
BMC BIOINFORMATICS (2004)
Transcriptional regulatory networks in Saccharomyces cerevisiae
TI Lee et al.
SCIENCE (2002)
Network motifs: Simple building blocks of complex networks
R Milo et al.
SCIENCE (2002)
Specificity and stability in topology of protein networks
S Maslov et al.
SCIENCE (2002)
Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity
Y Chinenov et al.
ONCOGENE (2001)
Share Paper
