4.8 Article

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

Matthias Hess et al.

SCIENCE (2011)

Review Microbiology

How to Make a Living by Exhaling Methane

James G. Ferry

ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemical Research Methods

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

Erik Kristiansson et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Environmental Sciences

Soil organic carbon pools in the northern circumpolar permafrost region

C. Tarnocai et al.

GLOBAL BIOGEOCHEMICAL CYCLES (2009)

Article Ecology

Selective progressive response of soil microbial community to wild oat roots

Kristen M. DeAngelis et al.

ISME JOURNAL (2009)

Article Biochemistry & Molecular Biology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

Morgan N. Price et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemical Research Methods

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

James Robert White et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Identification of ancient remains through genomic sequencing

Matthew J. Blow et al.

GENOME RESEARCH (2008)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Biochemical Research Methods

A novel and rapid method for synthesizing positive controls and standards for quantitative PCR

Maude M. David et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2008)

Article Biotechnology & Applied Microbiology

A simple, fast, and accurate method of phylogenomic inference

Martin Wu et al.

GENOME BIOLOGY (2008)

Article Biochemistry & Molecular Biology

IMG/M: a data management and analysis system for metagenomes

Victor M. Markowitz et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

Elmar Pruesse et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Multidisciplinary Sciences

Ancient bacteria show evidence of DNA repair

Sarah Stewart Johnson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Microbiology

Biogeochemistry of methane and methanogenic archaea in permafrost

Elizaveta Rivkina et al.

FEMS MICROBIOLOGY ECOLOGY (2007)

Article Geosciences, Multidisciplinary

Characteristics of the recent warming of permafrost in Alaska

T. E. Osterkamp

JOURNAL OF GEOPHYSICAL RESEARCH-EARTH SURFACE (2007)

Article Biochemistry & Molecular Biology

MEGAN analysis of metagenomic data

Daniel H. Huson et al.

GENOME RESEARCH (2007)

Article Biochemical Research Methods

Amplification of complex gene libraries by emulsion PCR

Richard Williams et al.

NATURE METHODS (2006)

Article Biotechnology & Applied Microbiology

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

T. Z. DeSantis et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biochemical Research Methods

Pvclust: an R package for assessing the uncertainty in hierarchical clustering

R Suzuki et al.

BIOINFORMATICS (2006)

Article Microbiology

Aerobic methanotrophic bacteria of cold ecosystems

YA Trotsenko et al.

FEMS MICROBIOLOGY ECOLOGY (2005)

Article Biotechnology & Applied Microbiology

Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition

RI Griffiths et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)