4.8 Article

Ancient human genome sequence of an extinct Palaeo-Eskimo

Journal

NATURE
Volume 463, Issue 7282, Pages 757-762

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/nature08835

Keywords

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Funding

  1. Danish National Research Foundation
  2. Lundbeck Foundation
  3. Danish Agency for Science, Technology and Innovation
  4. Villum Kann Rasmussen Fonden
  5. Novo Nordisk Foundation
  6. Estonian Science Foundation [7858]
  7. EC DGR [205419]
  8. EU RDF through Centre of Excellence in Genomics
  9. Shenzhen Municipal Government
  10. Yantian District local government of Shenzhen
  11. National Natural Science Foundation of China [30725008]
  12. Danish Natural Science Research Council
  13. Solexa project [272-07-0196]
  14. Danish Strategic Research Council [2106-07-0021]
  15. Australian Research Council
  16. Danish Council for Independent Research Medical Sciences
  17. National Science Foundation
  18. NSF [OPP-990590, OPP-0327676]
  19. NERC [NRCF010002] Funding Source: UKRI
  20. Lundbeck Foundation [R13-2007-1172, R24-2008-2527, R70-2010-6286] Funding Source: researchfish
  21. Natural Environment Research Council [NRCF010002] Funding Source: researchfish

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We report here the genome sequence of an ancient human. Obtained from similar to 4,000-year-old permafrost-preserved hair, the genome represents a male individual from the first known culture to settle in Greenland. Sequenced to an average depth of 20X, we recover 79% of the diploid genome, an amount close to the practical limit of current sequencing technologies. We identify 353,151 high-confidence single-nucleotide polymorphisms (SNPs), of which 6.8% have not been reported previously. We estimate raw read contamination to be no higher than 0.8%. We use functional SNP assessment to assign possible phenotypic characteristics of the individual that belonged to a culture whose location has yielded only trace human remains. We compare the high-confidence SNPs to those of contemporary populations to find the populations most closely related to the individual. This provides evidence for a migration from Siberia into the New World some 5,500 years ago, independent of that giving rise to the modern Native Americans and Inuit.

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