Related references
Note: Only part of the references are listed.Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes
I. Keller et al.
MOLECULAR ECOLOGY (2013)
Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments
Nagarjun Vijay et al.
MOLECULAR ECOLOGY (2013)
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Marcel H. Schulz et al.
BIOINFORMATICS (2012)
Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
Ke Bi et al.
BMC GENOMICS (2012)
Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers
Shanker Kalyana-Sundaram et al.
CELL (2012)
STRONG SELECTION AGAINST HYBRIDS MAINTAINS A NARROW CONTACT ZONE BETWEEN MORPHOLOGICALLY CRYPTIC LINEAGES IN A RAINFOREST LIZARD
Sonal Singhal et al.
EVOLUTION (2012)
De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence
Aaron A. Comeault et al.
MOLECULAR ECOLOGY RESOURCES (2012)
The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis
Pierre De Wit et al.
MOLECULAR ECOLOGY RESOURCES (2012)
De novo assembly and genotyping of variants using colored de Bruijn graphs
Zamin Iqbal et al.
NATURE GENETICS (2012)
De novo genome assembly: what every biologist should know
Monya Baker
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Ensembl 2012
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2012)
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Marc Lohse et al.
NUCLEIC ACIDS RESEARCH (2012)
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
Rasmus Nielsen et al.
PLOS ONE (2012)
Comment on Widespread RNA and DNA Sequence Differences in the Human Transcriptome
Wei Lin et al.
SCIENCE (2012)
Comment on Widespread RNA and DNA Sequence Differences in the Human Transcriptome
Claudia L. Kleinman et al.
SCIENCE (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
S. Samuel Yang et al.
BMC GENOMICS (2011)
A Hierarchical Bayesian Model for Next-Generation Population Genomics
Zachariah Gompert et al.
GENETICS (2011)
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
Gerton Lunter et al.
GENOME RESEARCH (2011)
A reduced representation approach to population genetic analyses and applications to human evolution
Francesca Luca et al.
GENOME RESEARCH (2011)
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl et al.
GENOME RESEARCH (2011)
A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
Daniel A. Skelly et al.
GENOME RESEARCH (2011)
Lygosomine phylogeny and the origins of Australian scincid lizards
Adam Skinner et al.
JOURNAL OF BIOGEOGRAPHY (2011)
被撤回的出版物: Evaluation of next-generation sequencing software in mapping and assembly (Retracted article. See vol. 56, pg. 687, 2011)
Suying Bao et al.
JOURNAL OF HUMAN GENETICS (2011)
PRGMATIC: an efficient pipeline for collating genome-enriched second-generation sequencing data using a 'provisional-reference genome'
Sarah M. Hird et al.
MOLECULAR ECOLOGY RESOURCES (2011)
Field guide to next-generation DNA sequencers
Travis C. Glenn
MOLECULAR ECOLOGY RESOURCES (2011)
Resolving the evolutionary relationships of molluscs with phylogenomic tools
Stephen A. Smith et al.
NATURE (2011)
The genome of the green anole lizard and a comparative analysis with birds and mammals
Jessica Alfoeldi et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Next-generation transcriptome assembly
Jeffrey A. Martin et al.
NATURE REVIEWS GENETICS (2011)
Genotype and SNP calling from next-generation sequencing data
Rasmus Nielsen et al.
NATURE REVIEWS GENETICS (2011)
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
Andre E. Minoche et al.
GENOME BIOLOGY (2011)
Assembly of large genomes using second-generation sequencing
Michael C. Schatz et al.
GENOME RESEARCH (2010)
Optimization of de novo transcriptome assembly from next-generation sequencing data
Yann Surget-Groba et al.
GENOME RESEARCH (2010)
Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
Xin Yi et al.
SCIENCE (2010)
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
Paul A. Hohenlohe et al.
PLOS GENETICS (2010)
FrameDP: sensitive peptide detection on noisy matured sequences
Jerome Gouzy et al.
BIOINFORMATICS (2009)
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
Daniel C. Koboldt et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
Daniel Ramskold et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
Ryan N. Gutenkunst et al.
PLOS GENETICS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
SOAP: short oligonucleotide alignment program
Ruiqiang Li et al.
BIOINFORMATICS (2008)
SNP discovery in swine by reduced representation and high throughput pyrosequencing
Ralph T. Wiedmann et al.
BMC GENETICS (2008)
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
D. Allan Drummond et al.
CELL (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Choosing BLAST options for better detection of orthologs as reciprocal best hits
Gabriel Moreno-Hagelsieb et al.
BIOINFORMATICS (2008)
Population genomics:: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
David J. Begun et al.
PLOS BIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
UniRef: comprehensive and non-redundant UniProt reference clusters
Baris E. Suzek et al.
BIOINFORMATICS (2007)
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
Genis Parra et al.
BIOINFORMATICS (2007)
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
Feng Chen et al.
PLOS ONE (2007)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
Feng Chen et al.
NUCLEIC ACIDS RESEARCH (2006)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
Assembly of polymorphic genomes:: Algorithms and application to Ciona savignyi
JP Vinson et al.
GENOME RESEARCH (2005)
Automated generation of heuristics for biological sequence comparison
GS Slater et al.
BMC BIOINFORMATICS (2005)