4.7 Article

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

Related references

Note: Only part of the references are listed.
Article Ecology

Global biogeography of highly diverse protistan communities in soil

Scott T. Bates et al.

ISME JOURNAL (2013)

Article Ecology

Phylogenetic conservatism of functional traits in microorganisms

Adam C. Martiny et al.

ISME JOURNAL (2013)

Article Biochemistry & Molecular Biology

Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils

Darren S. Baldwin et al.

MOLECULAR ECOLOGY (2013)

Review Microbiology

Beyond the Venn diagram: the hunt for a core microbiome

Ashley Shade et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Microbiology

The Revised Classification of Eukaryotes

Sina M. Adl et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2012)

Article Multidisciplinary Sciences

Shedding Light on Vampires: The Phylogeny of Vampyrellid Amoebae Revisited

Sebastian Hess et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

Susan M. Huse et al.

PLOS ONE (2012)

Review Ecology

Sequencing our way towards understanding global eukaryotic biodiversity

Holly M. Bik et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Article Environmental Sciences

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

Daniel Lundin et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2012)

Article Biochemical Research Methods

Cytoscape 2.8: new features for data integration and network visualization

Michael E. Smoot et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

UCHIME improves sensitivity and speed of chimera detection

Robert C. Edgar et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

Minseok Kim et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2011)

Article Biochemistry & Molecular Biology

The European Nucleotide Archive

Rasko Leinonen et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Microbiology

Barcoding Diatoms: Exploring Alternatives to COI-5P

Sarah E. Hamsher et al.

PROTIST (2011)

Review Soil Science

The importance and ecology of yeasts in soil

Alfred Botha

SOIL BIOLOGY & BIOCHEMISTRY (2011)

Article Microbiology

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Susan M. Huse et al.

ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

Viola Nolte et al.

MOLECULAR ECOLOGY (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Multidisciplinary Sciences

Microbial community structure and its functional implications

Jed A. Fuhrman

NATURE (2009)

Editorial Material Biochemical Research Methods

The 'rare biosphere': a reality check

Jens Reeder et al.

NATURE METHODS (2009)

Article Ecology

A comparison of taxon co-occurrence patterns for macro- and microorganisms

M. Claire Horner-Devine et al.

ECOLOGY (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Review Forestry

Protists in soil ecology and forest nutrient cycling

M. S. Adl et al.

CANADIAN JOURNAL OF FOREST RESEARCH (2006)

Article Agriculture, Multidisciplinary

Slow recovery of soil biodiversity in sandy loam soils of Georgia after 25 years of no-tillage management

SM Adl et al.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2006)

Article Agriculture, Multidisciplinary

Soil algae composition under different agro-ecosystems in North-Eastern Italy

S Zancan et al.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2006)

Article Biotechnology & Applied Microbiology

UniFrac: a new phylogenetic method for comparing microbial communities

C Lozupone et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Microbiology

Culturing and environmental DNA sequencing uncover hidden kinetoplastid biodiversity and a major marine clade within ancestrally freshwater Neobodo designis

S von der Heyden et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)

Article Agriculture, Multidisciplinary

Microbial biomass, enzyme activities and microbial community structure in two European long-term field experiments

L Böhme et al.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Review Plant Sciences

Protozoa and plant growth: the microbial loop in soil revisited

M Bonkowski

NEW PHYTOLOGIST (2004)

Article Biotechnology & Applied Microbiology

Molecular analysis of geographic patterns of eukaryotic diversity in Antarctic soils

B Lawley et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Review Soil Science

The long-term effects of manures and fertilisers on soil productivity and quality: a review

DC Edmeades

NUTRIENT CYCLING IN AGROECOSYSTEMS (2003)

Article Soil Science

Structure and function of the soil microbial community in a long-term fertilizer experiment

P Marschner et al.

SOIL BIOLOGY & BIOCHEMISTRY (2003)

Article Biotechnology & Applied Microbiology

Peptide nucleic acid-mediated PCR clamping as a useful supplement in the determination of microbial diversity

F von Wintzingerode et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)