Related references
Note: Only part of the references are listed.Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs
Anna Esteve-Codina et al.
BMC GENOMICS (2013)
Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana
Viola Nolte et al.
GENOME RESEARCH (2013)
Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples
Simon Boitard et al.
MOLECULAR ECOLOGY RESOURCES (2013)
An empirical Bayes mixture model for SNP detection in pooled sequencing data
Baiyu Zhou
BIOINFORMATICS (2012)
SNP calling by sequencing pooled samples
Emanuele Raineri et al.
BMC BIOINFORMATICS (2012)
Neutrality Tests for Sequences with Missing Data
Luca Ferretti et al.
GENETICS (2012)
Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples
Simon Boitard et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
How does adaptation sweep through the genome? Insights from long-term selection experiments
Molly K. Burke
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
The 5'? 3' exoribonuclease XRN1/Pacman and its functions in cellular processes and development
Christopher Iain Jones et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)
vipR: variant identification in pooled DNA using R
Andre Altmann et al.
BIOINFORMATICS (2011)
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
Robert Kofler et al.
BIOINFORMATICS (2011)
Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster
Bryan Kolaczkowski et al.
GENETICS (2011)
A Hierarchical Bayesian Model for Next-Generation Population Genomics
Zachariah Gompert et al.
GENETICS (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
Bayesian inference of ancient human demography from individual genome sequences
Ilan Gronau et al.
NATURE GENETICS (2011)
PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing
Quan Long et al.
PLOS ONE (2011)
PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
Robert Kofler et al.
PLOS ONE (2011)
Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA
Andreia J. Amaral et al.
PLOS ONE (2011)
Massive parallel sequencing in animal genetics: wherefroms and wheretos
M. Perez-Enciso et al.
ANIMAL GENETICS (2010)
MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus
Gregory Ewing et al.
BIOINFORMATICS (2010)
Estimating Divergence Parameters With Small Samples From a Large Number of Loci
Yong Wang et al.
GENETICS (2010)
To Pool, or Not to Pool?
David J. Cutler et al.
GENETICS (2010)
The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
Andreas Futschik et al.
GENETICS (2010)
Population genetic inference from genomic sequence variation
John E. Pool et al.
GENOME RESEARCH (2010)
Whole-genome resequencing reveals loci under selection during chicken domestication
Carl-Johan Rubin et al.
NATURE (2010)
Genome-wide analysis of a long-term evolution experiment with Drosophila
Molly K. Burke et al.
NATURE (2010)
High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency
Sarah E. Calvo et al.
NATURE GENETICS (2010)
Adaptation - not by sweeps alone
Jonathan K. Pritchard et al.
NATURE REVIEWS GENETICS (2010)
Resolving postglacial phylogeography using high-throughput sequencing
Kevin J. Emerson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites
Talia Karasov et al.
PLOS GENETICS (2010)
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
Paul A. Hohenlohe et al.
PLOS GENETICS (2010)
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
Daniel C. Koboldt et al.
BIOINFORMATICS (2009)
Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome
Andreia J. Amaral et al.
BMC GENOMICS (2009)
Population Genetic Inference From Resequencing Data
Rong Jiang et al.
GENETICS (2009)
Fast and flexible simulation of DNA sequence data
Gary K. Chen et al.
GENOME RESEARCH (2009)
A Bayesian Hierarchical Model for Analysis of Single-Nucleotide Polymorphisms Diversity in Multilocus, Multipopulation Samples
Feng Guo et al.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2009)
Quantification of rare allelic variants from pooled genomic DNA
Todd E. Druley et al.
NATURE METHODS (2009)
The 5′-3′ exoribonuclease Pacman is required for normal male fertility and is dynamically localized in cytoplasmic particles in Drosophila testis cells
Maria V. Zabolotskaya et al.
BIOCHEMICAL JOURNAL (2008)
Testing for neutrality in samples with sequencing errors
Guillaume Achat
GENETICS (2008)
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
Ines Hellmann et al.
GENOME RESEARCH (2008)
Estimation of Nucleotide Diversity, Disequilibrium Coefficients, and Mutation Rates from High-Coverage Genome-Sequencing Projects
Michael Lynch
MOLECULAR BIOLOGY AND EVOLUTION (2008)
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
Curtis P. Van Tassell et al.
NATURE METHODS (2008)
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
Nathan A. Baird et al.
PLOS ONE (2008)
Population genomics:: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
David J. Begun et al.
PLOS BIOLOGY (2007)
Statistical tests for detecting positive selection by utilizing high-frequency variants
Kai Zeng et al.
GENETICS (2006)
Consistency of estimators of population scaled parameters using composite likelihood
Carsten Wiuf
JOURNAL OF MATHEMATICAL BIOLOGY (2006)
Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
J Hermisson et al.
GENETICS (2005)
Pattern of polymorphism after strong artificial selection in a domestication event
H Innan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Maximum-likelihood estimation of demographic parameters using the frequency spectrum of unlinked single-nucleotide polymorphisms
AM Adams et al.
GENETICS (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
DNA pooling: A tool for large-scale association studies
P Sham et al.
NATURE REVIEWS GENETICS (2002)
An SNP map of the human genome generated by reduced representation shotgun sequencing
D Altshuler et al.
NATURE (2000)