4.1 Review

Targeted proteomics by selected reaction monitoring mass spectrometry: applications to systems biology and biomarker discovery

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics

Reiko Kiyonami et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Biochemical Research Methods

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean et al.

BIOINFORMATICS (2010)

Review Biochemical Research Methods

Role of spectral counting in quantitative proteomics

Deborah H. Lundgren et al.

EXPERT REVIEW OF PROTEOMICS (2010)

Article Biochemical Research Methods

Combinatorial Peptide Libraries Facilitate Development of Multiple Reaction Monitoring Assays for Low-Abundance Proteins

Andrei P. Drabovich et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Targeted In-Gel MRM: A Hypothesis Driven Approach for Colorectal Cancer Biomarker Discovery in Human Feces

Ching-Seng Ang et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Measurement of Protein Phosphorylation Stoichiometry by Selected Reaction Monitoring Mass Spectrometry

Lily L. Jin et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography-Tandem Mass Spectrometry

David L. Tabb et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Sialic Acid-focused Quantitative Mouse Serum Glycoproteomics by Multiple Reaction Monitoring Assay

Masaki Kurogochi et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Article Biochemical Research Methods

Synthetic Peptide Arrays for Pathway-Level Protein Monitoring by Liquid ChromatographyTandem Mass Spectrometry

Johannes A. Hewel et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Article Biochemical Research Methods

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

Paola Picotti et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

Bioinformatics analysis of mass spectrometry-based proteomics data sets

Chanchal Kumar et al.

FEBS LETTERS (2009)

Article Biochemical Research Methods

Differential Secreted Proteome Approach in Murine Model for Candidate Biomarker Discovery in Colon Cancer

Kannan Rangiah et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

Amol Prakash et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering

Ze-Qiang Ma et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

MaRiMba: A Software Application for Spectral Library-Based MRM Transition List Assembly

Carly A. Sherwood et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Article Biochemical Research Methods

Multiple-Reaction Monitoring Liquid Chromatography Mass Spectrometry for Monosaccharide Compositional Analysis of Glycoproteins

Loubna A. Hammad et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2009)

Article Biochemical Research Methods

MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM) Transitions

Jennifer A. Mead et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

Hasmik Keshishian et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed

Jesper V. Olsen et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Review Oncology

Targeted proteomic strategy for clinical biomarker discovery

Ralph Schiess et al.

MOLECULAR ONCOLOGY (2009)

Article Biochemistry & Molecular Biology

Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology

Brian Cox et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

Vincent A. Fusaro et al.

NATURE BIOTECHNOLOGY (2009)

Article Biotechnology & Applied Microbiology

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

Bernd Wollscheid et al.

NATURE BIOTECHNOLOGY (2009)

Review Biochemistry & Molecular Biology

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

Eric W. Deutsch et al.

EMBO REPORTS (2008)

Article Biochemical Research Methods

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

Vinzenz Lange et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Review Biochemistry & Molecular Biology

Selected reaction monitoring for quantitative proteomics: a tutorial

Vinzenz Lange et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Letter Biochemical Research Methods

A database of mass spectrometric assays for the yeast proteome

Paola Picotti et al.

NATURE METHODS (2008)

Article Multidisciplinary Sciences

Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: A quantitative proteomic analysis

Judith A. J. Steen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

Hasmik Keshishian et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Isotope-labeled protein standards

Virginie Brun et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse mode of breast cancer

Jeffrey R. Whiteaker et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemical Research Methods

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

Jianru Stahl-Zeng et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme

Dariusz J. Janecki et al.

ANALYTICAL BIOCHEMISTRY (2007)

Article Biotechnology & Applied Microbiology

The minimum information about a proteomics experiment (MIAPE)

Chris F. Taylor et al.

NATURE BIOTECHNOLOGY (2007)

Review Spectroscopy

Analytical strategies for identifying drug metabolites

Chandra Prakash et al.

MASS SPECTROMETRY REVIEWS (2007)

Article Biochemical Research Methods

Antibody-based enrichment of peptides for mass-spectrometry-based quantification on magnetic beads of serum biomarkers

Jeffrey R. Whiteaker et al.

ANALYTICAL BIOCHEMISTRY (2007)

Article Biotechnology & Applied Microbiology

eComputational prediction of proteotypic peptides for quantitative proteomics

Parag Mallick et al.

NATURE BIOTECHNOLOGY (2007)

Article Chemistry, Analytical

Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer

A Makarov et al.

ANALYTICAL CHEMISTRY (2006)

Article Biochemical Research Methods

Targeted comparative proteomics by liquid chromatography/matrix-assisted laser desorption/ionization triple-quadrupole mass spectrometry

JE Melanson et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2006)

Review Biochemistry & Molecular Biology

Mass spectrometry-based proteomics turns quantitative

SE Ong et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Biochemical Research Methods

Proteome dynamics during C2C12 myoblast differentiation

T Kislinger et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Biochemical Research Methods

The Orbitrap: a new mass spectrometer

QZ Hu et al.

JOURNAL OF MASS SPECTROMETRY (2005)

Article Multidisciplinary Sciences

Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS

H Steen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Biochemistry & Molecular Biology

Multisite protein modi. cation and intramolecular signaling

XJ Yang

ONCOGENE (2005)

Review Biochemical Research Methods

Kinomics: methods for deciphering the kinome

SA Johnson et al.

NATURE METHODS (2005)

Article Biochemical Research Methods

A novel strategy for quantitative proteornics using isotope-coded protein labels

A Schmidt et al.

PROTEOMICS (2005)

Article Biochemical Research Methods

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

PL Ross et al.

MOLECULAR & CELLULAR PROTEOMICS (2004)

Review Biochemical Research Methods

Current two-dimensional electrophoresis technology for proteomics

A Görg et al.

PROTEOMICS (2004)

Article Biochemical Research Methods

Open source system for analyzing, validating, and storing protein identification data

R Craig et al.

JOURNAL OF PROTEOME RESEARCH (2004)

Article Chemistry, Analytical

A statistical model for identifying proteins by tandem mass spectrometry

AI Nesvizhskii et al.

ANALYTICAL CHEMISTRY (2003)

Article Multidisciplinary Sciences

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

SA Gerber et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biotechnology & Applied Microbiology

A method for the comprehensive proteomic analysis of membrane proteins

CC Wu et al.

NATURE BIOTECHNOLOGY (2003)

Article Biochemical Research Methods

PRISM, a generic large scale proteomic investigation strategy for mammals

T Kislinger et al.

MOLECULAR & CELLULAR PROTEOMICS (2003)

Review Biochemical Research Methods

The human plasma proteome - History, character, and diagnostic prospects

NL Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2002)

Article Biochemical Research Methods

DTASelect and contrast: Tools for assembling and comparing protein identifications from shotgun proteomics

DL Tabb et al.

JOURNAL OF PROTEOME RESEARCH (2002)

Article Biotechnology & Applied Microbiology

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

MP Washburn et al.

NATURE BIOTECHNOLOGY (2001)

Article Biochemical Research Methods

O-18 Labeling: a tool for proteomics

II Stewart et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2001)