Related references
Note: Only part of the references are listed.Genome-Scale Modeling and In Silico Analysis of Ethanologenic Bacteria Zymomonas mobilis
Hanifah Widiastuti et al.
BIOTECHNOLOGY AND BIOENGINEERING (2011)
Flux-based analysis of sulfur metabolism in desulfurizing strains of Rhodococcus erythropolis
Shilpi Aggarwal et al.
FEMS MICROBIOLOGY LETTERS (2011)
Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism
Rajib Saha et al.
PLOS ONE (2011)
Biodesulfurization of dibenzothiophene by a newly isolated Rhodococcus erythropolis strain
Fatemeh Davoodi-Dehaghani et al.
BIORESOURCE TECHNOLOGY (2010)
In silico genome-scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival
Seung Bum Sohn et al.
BIOTECHNOLOGY JOURNAL (2010)
Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production
Seung Bum Sohn et al.
BIOTECHNOLOGY JOURNAL (2010)
Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data
Ali R. Zomorrodi et al.
BMC SYSTEMS BIOLOGY (2010)
The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies
Kyung Yun Lee et al.
MICROBIAL CELL FACTORIES (2010)
Genome-scale metabolic reconstruction and in silico analysis of methylotrophic yeast Pichia pastoris for strain improvement
Bevan K. S. Chung et al.
MICROBIAL CELL FACTORIES (2010)
Constraints-based genome-scale metabolic simulation for systems metabolic engineering
Jong Myoung Park et al.
BIOTECHNOLOGY ADVANCES (2009)
Flux balance analysis of biological systems: applications and challenges
Karthik Raman et al.
BRIEFINGS IN BIOINFORMATICS (2009)
Macromolecular and elemental composition analysis and extracellular metabolite balances of Pichia pastoris growing at different oxygen levels
Marc Carnicer et al.
MICROBIAL CELL FACTORIES (2009)
A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189
Patrick F. Suthers et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Genome-scale models of bacterial metabolism: reconstruction and applications
Maxime Durot et al.
FEMS MICROBIOLOGY REVIEWS (2009)
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
Juan Nogales et al.
BMC SYSTEMS BIOLOGY (2008)
Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1
Matthew A. Oberhardt et al.
JOURNAL OF BACTERIOLOGY (2008)
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
Jacek Puchalka et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2008)
Biodesulfurization of refractory organic sulfur compounds in fossil fuels
Mehran Soleimani et al.
BIOTECHNOLOGY ADVANCES (2007)
Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets
Neema Jamshidi et al.
BMC SYSTEMS BIOLOGY (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Mycothiol-dependent proteins in actinomycetes
Mamta Rawat et al.
FEMS MICROBIOLOGY REVIEWS (2007)
Microbial desulfurization of gasoline by free whole-cells of Rhodococcus erythropolis XP
B Yu et al.
FEMS MICROBIOLOGY LETTERS (2006)
Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4
M Sekine et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Microbial biocatalyst developments to upgrade fossil fuels
John J. Kilbane
CURRENT OPINION IN BIOTECHNOLOGY (2006)
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR):: an in silico genome-scale characterization of single- and double-deletion mutants
I Thiele et al.
JOURNAL OF BACTERIOLOGY (2005)
Modeling the production of a Rhodococcus erythropolis IGTS8 biocatalyst for DBT biodesulfurization:: Influence of media composition
CH del Olmo et al.
ENZYME AND MICROBIAL TECHNOLOGY (2005)
Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
E Fischer et al.
NATURE GENETICS (2005)
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
NC Duarte et al.
GENOME RESEARCH (2004)
Harnessing the catabolic diversity of rhodococci for environmental and biotechnological applications
R van der Geize et al.
CURRENT OPINION IN MICROBIOLOGY (2004)
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
I Famili et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Vector development, isolation of new promoters and enhancement of the catalytic activity of the Dsz enzyme complex in Rhodococcus sp strains
E Franchi et al.
OIL & GAS SCIENCE AND TECHNOLOGY-REVUE D IFP ENERGIES NOUVELLES (2003)
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
J Förster et al.
GENOME RESEARCH (2003)
MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis
DY Lee et al.
BIOINFORMATICS (2003)
The cbs mutant strain of Rhodococcus erythropolis KA2-5-1 expresses high levels of Dsz enzymes in the presence of sulfate
Y Tanaka et al.
ARCHIVES OF MICROBIOLOGY (2002)
Increase in desulfurization activity of Rhodococcus erythropolis KA2-5-1 using ethanol feeding
H Yan et al.
JOURNAL OF BIOSCIENCE AND BIOENGINEERING (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)