4.8 Article

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Evolutionary Biology

Characterizing the Phylogenetic Tree-Search Problem

Daniel Money et al.

SYSTEMATIC BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The Prevalence of Multifurcations in Tree-space and Their Implications for Tree-search

Simon Whelan et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Article Biochemical Research Methods

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies

BQ Minh et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

IQPNNI: Moving fast through tree space and stopping in time

LS Vinh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Evolutionary Biology

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon et al.

SYSTEMATIC BIOLOGY (2003)

Article Biochemistry & Molecular Biology

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

S Whelan et al.

MOLECULAR BIOLOGY AND EVOLUTION (2001)

Article Evolutionary Biology

Stochastic search strategy for estimation of maximum likelihood phylogenetic trees

LA Salter et al.

SYSTEMATIC BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A

ZH Yang

JOURNAL OF MOLECULAR EVOLUTION (2000)