Related references
Note: Only part of the references are listed.Selection for complex traits leaves little or no classic signatures of selection
Kathryn E. Kemper et al.
BMC GENOMICS (2014)
Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins
Lingyang Xu et al.
BMC GENOMICS (2014)
A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle
Lingyang Xu et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2014)
A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits
J. B. Cole et al.
JOURNAL OF DAIRY SCIENCE (2014)
Signatures of selection in five Italian cattle breeds detected by a 54K SNP panel
Giordano Mancini et al.
MOLECULAR BIOLOGY REPORTS (2014)
Current perspectives and the future of domestication studies
Greger Larson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Classic Selective Sweeps Revealed by Massive Sequencing in Cattle
Saber Qanbari et al.
PLOS GENETICS (2014)
Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
Jared E. Decker et al.
PLOS GENETICS (2014)
Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle
Ana M. Perez O'Brien et al.
GENETICS SELECTION EVOLUTION (2014)
RCircos: an R package for Circos 2D track plots
Hongen Zhang et al.
BMC BIOINFORMATICS (2013)
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height
Yuri T. Utsunomiya et al.
BMC GENETICS (2013)
Study of whole genome linkage disequilibrium in Nellore cattle
Rafael Espigolan et al.
BMC GENOMICS (2013)
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
Laercio R. Porto-Neto et al.
BMC GENOMICS (2013)
A genome-wide scan for signatures of differential artificial selection in ten cattle breeds
Sophie Rothammer et al.
BMC GENOMICS (2013)
Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations
Maria Ines Fariello et al.
GENETICS (2013)
Derived variants at six genes explain nearly half of size reduction in dog breeds
Maud Rimbault et al.
GENOME RESEARCH (2013)
The genomic signature of dog domestication reveals adaptation to a starch-rich diet
Erik Axelsson et al.
NATURE (2013)
Genome-Wide Detection of Selective Signature in Chinese Holstein
Dunfei Pan et al.
PLOS ONE (2013)
Novel Insights into the Bovine Polled Phenotype and Horn Ontogenesis in Bovidae
Aurelie Allais-Bonnet et al.
PLOS ONE (2013)
Genome-Wide Analysis Reveals Selection for Important Traits in Domestic Horse Breeds
Jessica L. Petersen et al.
PLOS GENETICS (2013)
SNP-based association mapping of the polled gene in divergent cattle breeds
D. Seichter et al.
ANIMAL GENETICS (2012)
Limited Evidence for Classic Selective Sweeps in African Populations
Julie M. Granka et al.
GENETICS (2012)
A Quasi-Exclusive European Ancestry in the Senepol Tropical Cattle Breed Highlights the Importance of the slick Locus in Tropical Adaptation
Laurence Flori et al.
PLOS ONE (2012)
Bovine Polledness - An Autosomal Dominant Trait with Allelic Heterogeneity
Ivica Medugorac et al.
PLOS ONE (2012)
Identification of a Short Region on Chromosome 6 Affecting Direct Calving Ease in Piedmontese Cattle Breed
Silvia Bongiorni et al.
PLOS ONE (2012)
A High Resolution Genome-Wide Scan for Significant Selective Sweeps: An Application to Pooled Sequence Data in Laying Chickens
Saber Qanbari et al.
PLOS ONE (2012)
Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle
Denis M. Larkin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Strong signatures of selection in the domestic pig genome
Carl-Johan Rubin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection
James W. Kijas et al.
PLOS BIOLOGY (2012)
Patterns of Ancestry, Signatures of Natural Selection, and Genetic Association with Stature in Western African Pygmies
Joseph P. Jarvis et al.
PLOS GENETICS (2012)
A High Density SNP Array for the Domestic Horse and Extant Perissodactyla: Utility for Association Mapping, Genetic Diversity, and Phylogeny Studies
Molly E. McCue et al.
PLOS GENETICS (2012)
Association, effects and validation of polymorphisms within the NCAPG-LCORL locus located on BTA6 with feed intake, gain, meat and carcass traits in beef cattle
Amanda K. Lindholm-Perry et al.
BMC GENETICS (2011)
Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle
Saber Qanbari et al.
BMC GENOMICS (2011)
Polymorphic Regions Affecting Human Height Also Control Stature in Cattle
Jennie E. Pryce et al.
GENETICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA
Andreia J. Amaral et al.
PLOS ONE (2011)
Deciphering the genetic basis of animal domestication
Pamela Wiener et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
Parallel Adaptive Divergence among Geographically Diverse Human Populations
Jacob A. Tennessen et al.
PLOS GENETICS (2011)
Inference of Relationships in Population Data Using Identity-by-Descent and Identity-by-State
Eric L. Stevens et al.
PLOS GENETICS (2011)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
Identification of Selection Signatures in Cattle Breeds Selected for Dairy Production
Alessandra Stella et al.
GENETICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
USING POPULATION GENOMICS TO DETECT SELECTION IN NATURAL POPULATIONS: KEY CONCEPTS AND METHODOLOGICAL CONSIDERATIONS
Paul A. Hohenlohe et al.
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2010)
Fibroblast-derived HB-EGF promotes Cdx2 expression in esophageal squamous cells
Farzana B. Rahman et al.
LABORATORY INVESTIGATION (2010)
Whole-genome resequencing reveals loci under selection during chicken domestication
Carl-Johan Rubin et al.
NATURE (2010)
From evolutionary genetics to human immunology: how selection shapes host defence genes
Luis B. Barreiro et al.
NATURE REVIEWS GENETICS (2010)
Genome-wide scans for footprints of natural selection
Taras K. Oleksyk et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle
Christopher M. Seabury et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Tracking footprints of artificial selection in the dog genome
Joshua M. Akey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection
Sharon R. Grossman et al.
SCIENCE (2010)
Vertebrate pigmentation: from underlying genes to adaptive function
Joanna K. Hubbard et al.
TRENDS IN GENETICS (2010)
Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits
Ben J. Hayes et al.
PLOS GENETICS (2010)
A genome map of divergent artificial selection between Bos taurus dairy cattle and Bos taurus beef cattle
B. J. Hayes et al.
ANIMAL GENETICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
A whole genome Bayesian scan for adaptive genetic divergence in West African cattle
Mathieu Gautier et al.
BMC GENOMICS (2009)
Inhibition of cytokinesis by overexpression of NudCL that is localized to the centrosome and midbody
Yuqi Cai et al.
CELL RESEARCH (2009)
Signals of recent positive selection in a worldwide sample of human populations
Joseph K. Pickrell et al.
GENOME RESEARCH (2009)
KIT variants in bovine ovarian cells and corpus luteum
Daniela Koch et al.
GROWTH FACTORS (2009)
Genome-wide association study identifies eight loci associated with blood pressure
Christopher Newton-Cheh et al.
NATURE GENETICS (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
Mapping genes for complex traits in domestic animals and their use in breeding programmes
Michael E. Goddard et al.
NATURE REVIEWS GENETICS (2009)
A Genome Scan for Positive Selection in Thoroughbred Horses
Jingjing Gu et al.
PLOS ONE (2009)
Development and Characterization of a High Density SNP Genotyping Assay for Cattle
Lakshmi K. Matukumalli et al.
PLOS ONE (2009)
The Genome Response to Artificial Selection: A Case Study in Dairy Cattle
Laurence Flori et al.
PLOS ONE (2009)
Signatures of natural selection are not uniform across genes of innate immune system, but purifying selection is the dominant signature
Souvik Mukherjee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Coat Variation in the Domestic Dog Is Governed by Variants in Three Genes
Edouard Cadieu et al.
SCIENCE (2009)
Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
Richard A. Gibbs et al.
SCIENCE (2009)
Contrasting Mode of Evolution at a Coat Color Locus in Wild and Domestic Pigs
Meiying Fang et al.
PLOS GENETICS (2009)
The bovine lactation genome: insights into the evolution of mammalian milk
Danielle G. Lemay et al.
GENOME BIOLOGY (2009)
Positive Selection in the Human Genome: From Genome Scans to Biological Significance
Joanna L. Kelley et al.
Annual Review of Genomics and Human Genetics (2008)
Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intraspecies variation, taxonomy and domestication
S. Hiendleder et al.
CYTOGENETIC AND GENOME RESEARCH (2008)
A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep
Belinda J. Norris et al.
GENOME RESEARCH (2008)
GENEPOP ' 007: a complete re-implementation of the GENEPOP software for Windows and Linux
Francois Rousset
MOLECULAR ECOLOGY RESOURCES (2008)
Highly effective SNP-based association mapping and management of recessive defects in livestock
Carole Charlier et al.
NATURE GENETICS (2008)
Patterns of Positive Selection in Six Mammalian Genomes
Carolin Kosiol et al.
PLOS GENETICS (2008)
Allelic heterogeneity at the equine KIT locus in dominant white (W) horses
Bianca Haase et al.
PLOS GENETICS (2007)
Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans
Daniel G. MacArthur et al.
NATURE GENETICS (2007)
PLINK: A tool set for whole-genome association and population-based linkage analyses
Shaun Purcell et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution
Ralph Haygood et al.
NATURE GENETICS (2007)
A single IGF1 allele is a major determinant of small size in dogs
Nathan B. Sutter et al.
SCIENCE (2007)
ABCA12 is the major harlequin ichthyosis gene
Anna C. Thomas et al.
JOURNAL OF INVESTIGATIVE DERMATOLOGY (2006)
The role of the bovine growth hormone receptor and prolactin receptor genes in milk, fat and protein production in Finnish Ayrshire dairy cattle
Sirja Viitala et al.
GENETICS (2006)
Genomic insights into positive selection
Shameek Biswas et al.
TRENDS IN GENETICS (2006)
Genomic signatures of positive selection in humans and the limits of outlier approaches
Joanna L. Kelley et al.
GENOME RESEARCH (2006)
A mammalian NudC-like protein essential for dynein stability and cell viability
Tianhua Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
A map of recent positive selection in the human genome (vol 4, pg 154, 2006)
BF Voight et al.
PLOS BIOLOGY (2006)
A map of recent positive selection in the human genome
BF Voight et al.
PLOS BIOLOGY (2006)
Genomic scans for selective sweeps using SNP data
R Nielsen et al.
GENOME RESEARCH (2005)
Fine mapping of the polled locus to a 1-Mb region on bovine Chromosome 1q12
C Drögemüller et al.
MAMMALIAN GENOME (2005)
Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle
M Cohen-Zinder et al.
GENOME RESEARCH (2005)
Haploview: analysis and visualization of LD and haplotype maps
JC Barrett et al.
BIOINFORMATICS (2005)
Mapping of a milk production quantitative trait locus to a 420-kb region on bovine chromosome 6
HG Olsen et al.
GENETICS (2005)
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs et al.
NATURE (2004)
Domestic-animal genomics: deciphering the genetics of complex traits
L Andersson et al.
NATURE REVIEWS GENETICS (2004)
Evidence for substantial fine-scale variation in recombination rates across the human genome
DC Crawford et al.
NATURE GENETICS (2004)
Initial sequencing and comparative analysis of the mouse genome
RH Waterston et al.
NATURE (2002)
Detecting recent positive selection in the human genome from haplotype structure
PC Sabeti et al.
NATURE (2002)
Genetic evidence for Near-Eastern origins of European cattle
CS Troy et al.
NATURE (2001)
A new statistical method for haplotype reconstruction from population data
M Stephens et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2001)
Share Paper
