4.8 Article

Lowly Expressed Genes in Arabidopsis thaliana Bear the Signature of Possible Pseudogenization by Promoter Degradation

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

Sergei A. Filichkin et al.

GENOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Identification and characterization of pseudogenes in the rice gene complement

Francoise Thibaud-Nissen et al.

BMC GENOMICS (2009)

Article Biotechnology & Applied Microbiology

Comparative transcriptomics in the Triticeae

Andreas W. Schreiber et al.

BMC GENOMICS (2009)

Article Plant Sciences

Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice

Cheng Zou et al.

PLANT PHYSIOLOGY (2009)

Article Biochemistry & Molecular Biology

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

Ryan Lister et al.

Article Multidisciplinary Sciences

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

Oliver H. Tam et al.

NATURE (2008)

Editorial Material Multidisciplinary Sciences

Perspective - Selection on major components of angiosperm genomes

Brandon S. Gaut et al.

SCIENCE (2008)

Article Multidisciplinary Sciences

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

Richard M. Clark et al.

SCIENCE (2007)

Article Biochemical Research Methods

PseudoPipe: an automated pseudogene identification pipeline

Zhaolei Zhang et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Processed pseudogenes, processed genes, and spontaneous mutations in the Arabidopsis genome

David Benovoy et al.

JOURNAL OF MOLECULAR EVOLUTION (2006)

Review Genetics & Heredity

An integrated view of protein evolution

C Pál et al.

NATURE REVIEWS GENETICS (2006)

Article Genetics & Heredity

Pseudo-messenger RNA: Phantoms of the transcriptome

Martin C. Frith et al.

PLOS GENETICS (2006)

Article Multidisciplinary Sciences

Evolutionary fate of retroposed gene copies in the human genome

N Vinckenbosch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Why highly expressed proteins evolve slowly

DA Drummond et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

The transcriptional landscape of the mammalian genome

P Carninci et al.

SCIENCE (2005)

Article Genetics & Heredity

A gene expression map of Arabidopsis thaliana development

M Schmid et al.

NATURE GENETICS (2005)

Article Biochemistry & Molecular Biology

Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata

SI Wright et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

cis-Regulatory and protein evolution in orthologous and duplicate genes

CI Castillo-Davis et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

The use of MPSS for whole-genome transcriptional analysis in Arabidopsis

BC Meyers et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

An analysis of determinants of amino acids substitution rates in bacterial proteins

EPC Rocha et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

Building genomic profiles for uncovering segmental homology in the twilight zone

C Simillion et al.

GENOME RESEARCH (2004)

Review Genetics & Heredity

Molecular population genetics of the β-esterase gene cluster of Drosophila melanogaster

ES Balakirev et al.

JOURNAL OF GENETICS (2003)

Article Multidisciplinary Sciences

Empirical analysis of transcriptional activity in the Arabidopsis genome

K Yamada et al.

SCIENCE (2003)

Review Biochemistry & Molecular Biology

The evolution of transcriptional regulation in eukaryotes

GA Wray et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Genetics & Heredity

Population-genetic models of the fates of duplicate genes

B Walsh

GENETICA (2003)

Review Biochemistry & Molecular Biology

Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis

BC Meyers et al.

PLANT CELL (2003)

Article Multidisciplinary Sciences

The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis

JM Gagne et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution

P Harrison et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate

L Duret et al.

MOLECULAR BIOLOGY AND EVOLUTION (2000)