4.8 Article

Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Structural comparison of cupredoxin domains: Domain recycling to construct proteins with novel functions

MICHAEL E. P. Murphy et al.

PROTEIN SCIENCE (2010)

Article Biochemistry & Molecular Biology

Genomic analysis reveals widespread occurrence of new classes of copper nitrite reductases

Mark J. Ellis et al.

JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2007)

Article Multidisciplinary Sciences

Ohno's dilemma: Evolution of new genes under continuous selection

Ulfar Bergthorsson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Microbiology

Selenite-reducing capacity of the copper-containing nitrite reductase of Rhizobium sullae

Marina Basaglia et al.

FEMS MICROBIOLOGY LETTERS (2007)

Article Multidisciplinary Sciences

Structure and function of a hexameric copper-containing nitrite reductase

Masaki Nojiri et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biotechnology & Applied Microbiology

Analysis of denitrification genes and comparison of nosZ, cnorB and 16S rDNA from culturable denitrifying bacteria in potato cropping systems

C. E. Dandie et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2007)

Article Microbiology

The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers

Kim Heylen et al.

ENVIRONMENTAL MICROBIOLOGY (2006)

Article Agronomy

The taxonomy of rhizobia: an overview

Anne Willems

PLANT AND SOIL (2006)

Article Biochemistry & Molecular Biology

Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori

Bjorn Sallstrom et al.

JOURNAL OF MOLECULAR EVOLUTION (2006)

Article Biochemical Research Methods

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models

Stephan Waack et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria

T Shi et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biotechnology & Applied Microbiology

Presence of two different active nirS nitrite reductase genes in a denitrifying Thauera sp from a high-nitrate-removal-rate reactor

C Etchebehere et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biochemical Research Methods

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

ORP Bininda-Emonds

BMC BIOINFORMATICS (2005)

Review Biochemistry & Molecular Biology

Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type

WG Zumft

JOURNAL OF INORGANIC BIOCHEMISTRY (2005)

Article Biochemistry & Molecular Biology

Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent

H Jeong et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

K Nakamura et al.

FEBS LETTERS (2003)

Article Evolutionary Biology

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon et al.

SYSTEMATIC BIOLOGY (2003)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Article Biotechnology & Applied Microbiology

Nitric oxide reductase (norB) genes from pure cultures and environmental samples

G Braker et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Comparative genetic diversity of the narG, nosZ, and 16S rRNA genes in fluorescent pseudomonads

S Delorme et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Microbiology

Brucella evolution and taxonomy

E Moreno et al.

VETERINARY MICROBIOLOGY (2002)

Review Biochemistry & Molecular Biology

Denitrifying genes in bacterial and Archaeal genomes

L Philippot

BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2002)

Article Evolutionary Biology

Potential applications and pitfalls of Bayesian inference of phylogeny

JP Huelsenbeck et al.

SYSTEMATIC BIOLOGY (2002)

Article Biochemical Research Methods

CONSEL: for assessing the confidence of phylogenetic tree selection

H Shimodaira et al.

BIOINFORMATICS (2001)

Article Biochemistry & Molecular Biology

Maximum-likelihood phylogenetic analysis under a covarion-like model

N Galtier

MOLECULAR BIOLOGY AND EVOLUTION (2001)

Article Biochemistry & Molecular Biology

A novel copper A containing menaquinol NO reductase from Bacillus azotoformans

Suharti et al.

BIOCHEMISTRY (2001)

Article Biochemical Research Methods

Artemis: sequence visualization and annotation

K Rutherford et al.

BIOINFORMATICS (2000)