Related references
Note: Only part of the references are listed.Sequencing-Grade De novo Analysis of MS/MS Triplets (CID/HCD/ETD) From Overlapping Peptides
Adrian Guthals et al.
JOURNAL OF PROTEOME RESEARCH (2013)
Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins
Jacek R. Wisniewski et al.
PROTEOMICS CLINICAL APPLICATIONS (2013)
Consecutive Proteolytic Digestion in an Enzyme Reactor Increases Depth of Proteomic and Phosphoproteomic Analysis
Jacek R. Wisniewski et al.
ANALYTICAL CHEMISTRY (2012)
A Systematic Investigation into the Nature of Tryptic HCD Spectra
Annette Michalski et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Charge State Coalescence During Electrospray Ionization Improves Peptide Identification by Tandem Mass Spectrometry
Jesse G. Meyer et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2012)
System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap
Nagarjuna Nagaraj et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Peptide Identification by Tandem Mass Spectrometry with Alternate Fragmentation Modes
Adrian Guthals et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Modification Site Localization Scoring: Strategies and Performance
Robert J. Chalkley et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Effectiveness of CID, HCD, and ETD with FT MS/MS for Degradomic-Peptidomic Analysis: Comparison of Peptide Identification Methods
Yufeng Shen et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Target-Decoy Approach and False Discovery Rate: When Things May Go Wrong
Nitin Gupta et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2011)
Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
Yuexi Wang et al.
PROTEOMICS (2011)
Mass spectrometry-based proteomics in cell biology
Tobias C. Walther et al.
JOURNAL OF CELL BIOLOGY (2010)
Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics
Danielle L. Swaney et al.
JOURNAL OF PROTEOME RESEARCH (2010)
The Generating Function of CID, ETD, and CID/ETD Pairs of Tandem Mass Spectra: Applications to Database Search
Sangtae Kim et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
Elastase Digests NEW AMMUNITION FOR SHOTGUN MEMBRANE PROTEOMICS
Benjamin Rietschel et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Unbiased Quantitation of Escherichia coli Membrane Proteome Using Phase Transfer Surfactants
Takeshi Masuda et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed
Jesper V. Olsen et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Improved visualization of protein consensus sequences by iceLogo
Niklaas Colaert et al.
NATURE METHODS (2009)
Evaluation of the Low-Specificity Protease Elastase for Large-Scale Phosphoproteome Analysis
Bin Wang et al.
ANALYTICAL CHEMISTRY (2008)
ProteoWizard: open source software for rapid proteomics tools development
Darren Kessner et al.
BIOINFORMATICS (2008)
Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis
Takeshi Masuda et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
Sangtae Kim et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
Lyris M. F. de Godoy et al.
NATURE (2008)
Decision tree-driven tandem mass spectrometry for shotgun proteomics
Danielle L. Swaney et al.
NATURE METHODS (2008)
Optimized Protein Extraction for Quantitative Proteomics of Yeasts
Tobias von der Haar
PLOS ONE (2007)
Statistical characterization of the charge state and residue dependence of low-energy CID peptide dissociation patterns
YY Huang et al.
ANALYTICAL CHEMISTRY (2005)
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
Andrew Keller et al.
MOLECULAR SYSTEMS BIOLOGY (2005)
Influence of basic residue content on fragment ion peak intensities in low-energy - collision-induced dissociation spectra of peptides
DL Tabb et al.
ANALYTICAL CHEMISTRY (2004)
Intensity-based protein identification by machine learning from a library of tandem mass spectra
JE Elias et al.
NATURE BIOTECHNOLOGY (2004)
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
JEP Syka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides
DL Tabb et al.
ANALYTICAL CHEMISTRY (2003)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)
Shotgun identification of protein modifications from protein complexes and lens tissue
MJ MacCoss et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Energetic landscape of α-lytic protease optimizes longevity through kinetic stability
SS Jaswal et al.
NATURE (2002)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)