Related references
Note: Only part of the references are listed.Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions
Mathieu Courcelles et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Temporal regulation of EGF signalling networks by the scaffold protein Shc1
Yong Zheng et al.
NATURE (2013)
Integrated proteomic analysis of post-translational modifications by serial enrichment
Philipp Mertins et al.
NATURE METHODS (2013)
Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation
Danielle L. Swaney et al.
NATURE METHODS (2013)
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
Andrea Franceschini et al.
NUCLEIC ACIDS RESEARCH (2013)
The BioGRID interaction database: 2013 update
Andrew Chatr-aryamontri et al.
NUCLEIC ACIDS RESEARCH (2013)
Dissection of TBK1 signaling via phosphoproteomics in lung cancer cells
Jae-Young Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Technologies and challenges in large-scale phosphoproteomics
Kasper Engholm-Keller et al.
PROTEOMICS (2013)
Quantitative Phosphoproteomics Reveal mTORC1 Activates de Novo Pyrimidine Synthesis
Aaron M. Robitaille et al.
SCIENCE (2013)
Advances in phosphopeptide enrichment techniques for phosphoproteomics
Luisa Beltran et al.
AMINO ACIDS (2012)
Advances in Quantitative Phosphoproteomics
Carol L. Nilsson
ANALYTICAL CHEMISTRY (2012)
Consecutive Proteolytic Digestion in an Enzyme Reactor Increases Depth of Proteomic and Phosphoproteomic Analysis
Jacek R. Wisniewski et al.
ANALYTICAL CHEMISTRY (2012)
Increasing the Multiplexing Capacity of TMTs Using Reporter Ion Isotopologues with Isobaric Masses
Graeme C. McAlister et al.
ANALYTICAL CHEMISTRY (2012)
Functional Interplay between Caspase Cleavage and Phosphorylation Sculpts the Apoptotic Proteome
Melissa M. Dix et al.
CELL (2012)
Occurrence and Detection of Phosphopeptide Isomers in Large-Scale Phosphoproteomics Experiments
Mathieu Courcelles et al.
JOURNAL OF PROTEOME RESEARCH (2012)
Improve the Coverage for the Analysis of Phosphoproteome of HeLa Cells by a Tandem Digestion Approach
Yangyang Bian et al.
JOURNAL OF PROTEOME RESEARCH (2012)
TSLP Signaling Network Revealed by SILAC-Based Phosphoproteomics
Jun Zhong et al.
MOLECULAR & CELLULAR PROTEOMICS (2012)
Sequential Posttranslational Modifications Program FEN1 Degradation during Cell-Cycle Progression
Zhigang Guo et al.
MOLECULAR CELL (2012)
Phosphorylation sites of higher stoichiometry are more conserved
Chris Soon Heng Tan et al.
NATURE METHODS (2012)
The IntAct molecular interaction database in 2012
Samuel Kerrien et al.
NUCLEIC ACIDS RESEARCH (2012)
Phos-tag SDS-PAGE systems for phosphorylation profiling of proteins with a wide range of molecular masses under neutral pH conditions
Eiji Kinoshita et al.
PROTEOMICS (2012)
Sample preparation and analytical strategies for large-scale phosphoproteomics experiments
Evgeny Kanshin et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2012)
Protein kinase signaling networks in cancer
John Brognard et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2011)
Universal and Confident Phosphorylation Site Localization Using phosphoRS
Thomas Taus et al.
JOURNAL OF PROTEOME RESEARCH (2011)
Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis
Scott B. Ficarro et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Correct Interpretation of Comprehensive Phosphorylation Dynamics Requires Normalization by Protein Expression Changes
Ronghu Wu et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Evaluation of HCD- and CID-type Fragmentation Within Their Respective Detection Platforms For Murine Phosphoproteomics
Mark P. Jedrychowski et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
A large-scale method to measure absolute protein phosphorylation stoichiometries
Ronghu Wu et al.
NATURE METHODS (2011)
Activation and Function of the MAPKs and Their Substrates, the MAPK-Activated Protein Kinases
Marie Cargnello et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Processive phosphorylation of ERK MAP kinase in mammalian cells
Kazuhiro Aokia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Less label, more free: Approaches in label-free quantitative mass spectrometry
Karlie A. Neilson et al.
PROTEOMICS (2011)
Phosphoproteomic Analysis Identifies Grb10 as an mTORC1 Substrate That Negatively Regulates Insulin Signaling
Yonghao Yu et al.
SCIENCE (2011)
The mTOR-Regulated Phosphoproteome Reveals a Mechanism of mTORC1-Mediated Inhibition of Growth Factor Signaling
Peggy P. Hsu et al.
SCIENCE (2011)
Regulation of cell proliferation and survival: Convergence of protein kinases and caspases
James S. Duncan et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2010)
Stoichiometric Quantification of Akt Phosphorylation Using LC-MS/MS
Abdelmadjid Atrih et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Phosphorylation-Dependent Interaction of SATB1 and PIAS1 Directs SUMO-Regulated Caspase Cleavage of SATB1
Joseph-Anthony T. Tan et al.
MOLECULAR AND CELLULAR BIOLOGY (2010)
ELM: the status of the 2010 eukaryotic linear motif resource
Cathryn M. Gould et al.
NUCLEIC ACIDS RESEARCH (2010)
Akt-RSK-S6 Kinase Signaling Networks Activated by Oncogenic Receptor Tyrosine Kinases
Albrecht Moritz et al.
SCIENCE SIGNALING (2010)
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
Jesper V. Olsen et al.
SCIENCE SIGNALING (2010)
Caspases and Kinases in a Death Grip
Manabu Kurokawa et al.
CELL (2009)
The RASopathies: developmental syndromes of Ras/MAPK pathway dysregulation
William E. Tidyman et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)
SLoMo: Automated Site Localization of Modifications from ETD/ECD Mass Spectra
Christopher M. Bailey et al.
JOURNAL OF PROTEOME RESEARCH (2009)
A New Approach for Quantitative Phosphoproteomic Dissection of Signaling Pathways Applied to T Cell Receptor Activation
Vinh Nguyen et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Global Effects of Kinase Inhibitors on Signaling Networks Revealed by Quantitative Phosphoproteomics
Cuiping Pan et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Functional Proteomics Identifies Targets of Phosphorylation by B-Raf Signaling in Melanoma
William M. Old et al.
MOLECULAR CELL (2009)
InterPro: the integrative protein signature database
Sarah Hunter et al.
NUCLEIC ACIDS RESEARCH (2009)
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
Danielle L. Swaney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Cell-Specific Information Processing in Segregating Populations of Eph Receptor Ephrin-Expressing Cells
Claus Jorgensen et al.
SCIENCE (2009)
Niobium(V) oxide (Nb2O5):: Application to phosphoproteomics
Scott B. Ficarro et al.
ANALYTICAL CHEMISTRY (2008)
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
Neil F. W. Saunders et al.
BMC BIOINFORMATICS (2008)
A Comparative Study of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus SCX-IMAC-Based Methods for Phosphopeptide Isolation/Enrichment
Chee Sian Gan et al.
JOURNAL OF PROTEOME RESEARCH (2008)
TiO2-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment
Tine E. Thingholm et al.
JOURNAL OF PROTEOME RESEARCH (2008)
PhosphoScore:: An open-source phosphorylation site assignment tool for MSn data
Brian E. Ruttenberg et al.
JOURNAL OF PROTEOME RESEARCH (2008)
PhosphoScan: A probability-based method for phosphorylation site prediction using MS2/MS3 pair information
Yunhu Wan et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Hydrophilic interaction chromatography reduces the complexity of the phosphoproteome and improves global phosphopeptide isolation and detection
Dean E. McNulty et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
Judit Villen et al.
NATURE PROTOCOLS (2008)
SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides
Tine E. Thingholm et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
NetworKIN: a resource for exploring cellular phosphorylation networks
Rune Linding et al.
NUCLEIC ACIDS RESEARCH (2008)
The age of crosstalk: Phosphorylation, ubiquitination, and beyond
Tony Hunter
MOLECULAR CELL (2007)
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
Klarisa Rikova et al.
CELL (2007)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
SUMO-targeted ubiquitin ligases in genome stability
John Prudden et al.
EMBO JOURNAL (2007)
A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria
Taeko Nishiwaki et al.
EMBO JOURNAL (2007)
Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation
Zihao Wang et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Mechanisms of specificity in protein phosphorylation (vol 8, pg 530, 2007)
Jeffrey A. Ubersax et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Mechanisms of specificity in protein phosphorylation
Jeffrey A. Ubersax et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Quantitative proteomic assessment of very early cellular signaling events
Joern Dengjel et al.
NATURE BIOTECHNOLOGY (2007)
Cycling of O-linked β-N-acetylglucosamine on nucleocytoplasmic proteins
Gerald W. Hart et al.
NATURE (2007)
Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities
Frank Stegmeier et al.
NATURE (2007)
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
An Chi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
Henrik Molina et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The utility of ETD mass spectrometry in proteomic analysis
Leann M. Mikesh et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2006)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Jesper V. Olsen et al.
CELL (2006)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
Sean A. Beausoleil et al.
NATURE BIOTECHNOLOGY (2006)
A recurrent phospho-sumoyl switch in transcriptional repression and beyond
Xiang-Jiao Yang et al.
MOLECULAR CELL (2006)
Phosphoproteomic analysis of Her2/neu signaling and inhibition
Ron Bose et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis
HK Kweon et al.
ANALYTICAL CHEMISTRY (2006)
Activation of the E3 ubiquitin ligase Itch through a phosphorylation-induced conformational change
E Gallagher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Negative regulation of the E3 ubiquitin ligase itch via Fyn-mediated tyrosine phosphorylation
C Yang et al.
MOLECULAR CELL (2006)
Akt phosphorylates and regulates Pdcd4 tumor suppressor protein
A Palamarchuk et al.
CANCER RESEARCH (2005)
14-3-3 proteins modulate the expression of epithelial Na+ channels by phosphorylation-dependent interaction with Nedd4-2 ubiquitin ligase
T Ichimura et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
J Rush et al.
NATURE BIOTECHNOLOGY (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
T Pawson
CELL (2004)
Tumor-promoting phorbol esters and activated Ras inactivate the tuberous sclerosis tumor suppressor complex via p90 ribosomal S6 kinase
PP Roux et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The SCF ubiquitin ligase: Insights into a molecular machine
T Cardozo et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)
Proteomic, functional, and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization
J Jin et al.
CURRENT BIOLOGY (2004)
Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-nanoLC-ESI-MS/MS and titanium oxide precolumns
MWH Pinkse et al.
ANALYTICAL CHEMISTRY (2004)
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
PL Ross et al.
MOLECULAR & CELLULAR PROTEOMICS (2004)
Protein tyrosine kinases Src and Csk: a tail's tale
PA Cole et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2003)
Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs
JC Obenauer et al.
NUCLEIC ACIDS RESEARCH (2003)
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
SA Gerber et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Effect of caspase cleavage-site phosphorylation on proteolysis
J Tözsér et al.
BIOCHEMICAL JOURNAL (2003)
Tandem mass tags:: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
A Thompson et al.
ANALYTICAL CHEMISTRY (2003)
The specificities of protein kinase inhibitors: an update
J Bain et al.
BIOCHEMICAL JOURNAL (2003)
Mass spectrometric-based approaches in quantitative proteomics
SE Ong et al.
METHODS (2003)
Phosphoprotein analysis using antibodies broadly reactive against phosphorylated motifs
H Zhang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Identification of the tuberous sclerosis complex-2 tumor suppressor gene product tuberin as a target of the phosphoinositide 3-Kinase/Akt pathway
BD Manning et al.
MOLECULAR CELL (2002)
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
SE Ong et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)