4.7 Article

MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM) Transitions

Related references

Note: Only part of the references are listed.
Review Biochemistry & Molecular Biology

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

Eric W. Deutsch et al.

EMBO REPORTS (2008)

Article Biochemical Research Methods

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

Vinzenz Lange et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Letter Biotechnology & Applied Microbiology

Human Proteinpedia enables sharing of human protein data

Suresh Mathivanan et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemical Research Methods

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

Hasmik Keshishian et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

Jianru Stahl-Zeng et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides

Maria Falth et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemical Research Methods

Detection of protein-RNA crosslinks by nanoLC-ESI-MS/MS using precursor ion scanning and multiple reaction monitoring (MRM) experiments

Christof Lenz et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2007)

Article Multidisciplinary Sciences

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

Alejandro Wolf-Yadlin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biotechnology & Applied Microbiology

eComputational prediction of proteotypic peptides for quantitative proteomics

Parag Mallick et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemical Research Methods

GAPP: A fully automated software for the confident identification of human peptides from tandem mass spectra

Ian Shadforth et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Review Biotechnology & Applied Microbiology

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

Nader Rifai et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemical Research Methods

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

L Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Biochemical Research Methods

Analysis of phosphorylation sites on focal adhesion kinase using nanospray liquid chromatography/multiple reaction monitoring mass spectrometry

Eugene Ciccimaro et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2006)

Article Biochemical Research Methods

Multiple reaction monitoring to identify sites of protein phosphorylation with high sensitivity

RD Unwin et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Article Biochemical Research Methods

Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra

JF Zhang et al.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2005)

Article Biochemical Research Methods

Confident protein identification using the average peptide score method coupled with search-specific, ab initio thresholds

I Shadforth et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2005)

Article Biochemical Research Methods

The use of proteotypic peptide libraries for protein identification

R Craig et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2005)

Article Multidisciplinary Sciences

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

SA Gerber et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemical Research Methods

A method for reducing the time required to match protein sequences with tandem mass spectra

R Craig et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2003)